Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq66703 235 6e-57 >seq66703 Length=1304 Score = 235 bits (260), Expect = 6e-57 Identities = 461/680 (68%), Gaps = 21/680 (3%) Strand=Plus/Minus Query 139909 TGATATTGATAATCTTGTATCTCAAAATCATCTACGGTAACCCAGGTTTCAATATCTTCT 139968 ||||| ||||| ||| | |||||||| || | || ||||| || ||||||||||| Sbjct 937 TGATACTGATACCCTTCCACTTCAAAATCGTCCAATGTTACCCATGTCTCAATATCTTCG 878 Query 139969 AAAGATTGAATGTTATCATTAATAATAAGTTTTGGTGCCTCAAATGGCTCTCTAGAGATA 140028 | ||| | ||| | | ||||| |||||| || || | | || || | | | Sbjct 877 AGAGACTTAATTTCAGGGTTAATGTGAAGTTTAGGGGCTGGATACGGTTCGC--GTTNCA 820 Query 140029 TGTTCTGGAACCAATTTAAGTTGGTCTTCATAGATATGAGCATTTGTAATTTTATGAAAT 140088 || | | | |||| | ||| |||||||| ||||| |||||| || |||||| | Sbjct 819 CGT-CACGCATTAATTGTAATTGATCTTCATAAATATGTGCATTTACGATCTTATGATAA 761 Query 140089 ACACGCCCAAATTTATTGCCGGTAATTTGTGCCATTA-AGCGTAATAAAACATAACACT- 140146 | || | | ||| |||||||| ||||| | ||| || ||| | |||||| Sbjct 760 GCTTTTCCGGCCTCGTGGCCCGTAATTTGAGCCATGAGAGC-TAGTAAGGTA-AACACTT 703 Query 140147 GTACCATATTAAAATTTAATCCCAATGGGACATCACATGATCTTTGGTATGAAGTTAAAT 140206 | | | |||||||||| || ||||| ||||||||||| | ||| ||||||| |||| Sbjct 702 GAATCTGATTAAAATTTTGACCTAATGGTACATCACATGAACGTTGTGATGAAGTCAAAT 643 Query 140207 ATAATGTGCTAT-TAACTAAAGAAAAATTATGTGTATGCATACATGGACGCAAACATCCT 140265 | | ||| | |||| || ||||| |||| ||||||||||| ||||| |||||||| Sbjct 642 AAAGCTTGCCACCTAAC-AACGAAAATGTATGAGTATGCATACAAGGACGTAAACATCCC 584 Query 140266 AAGTCAAATTCACCTGGGTTCCAGAAAGTAATAATTTCTCCACGGTCATCAATACCTTGG 140325 | | ||| |||||||| || |||| || | |||||| || |||||||||||||| | Sbjct 583 ATATGAAACTCACCTGGATTGTAGAAGGTTAGAATTTCACCTCGGTCATCAATACCGTTT 524 Query 140326 CTTAAATTATCATATACTTTTCTTAGTTGGT------------CTACAGAACCATTCCAA 140373 | || |||||||| | || || |||| |||| ||| | ||| Sbjct 523 CGCAAGTTATCATAGATCTTATGAAGCTGGTCAAACTCCTCTCCTACTGAATTACGCCAC 464 Query 140374 GAACGTCCTTGGACACCGTAAACACGACCCATATCATCGGGTCCTTTACGATTAGGATTA 140433 || || || ||||| ||||| || ||||||||||| |||||||||| ||||||| Sbjct 463 CTGCGCCCCTGTACACCATAAACTCGGCCCATATCATCCTTACCTTTACGATAAGGATTA 404 Query 140434 TTTAACCATGATTCGTTNNNnnnnnnnNNNNNNNNCCATGTATTACACCCAATCTCACGA 140493 |||||| | ||| || |||||||||||| ||||| | ||| Sbjct 403 GCTAACCAAGCTTCATTTTCATTGGCATTAGCGTTCCATGTATTACATCCAATAGCTCGA 344 Query 140494 AATTGTGCAGCACTTGAATACCCACGAAGATATCCTAGCAGTTCAGCAATAGCAGCTTTA 140553 || || || || || ||| ||||| ||||| |||| | ||| || ||||| ||||| Sbjct 343 AACTGAGCTGCGCTATCATAACCACGTAGATACCCTAATAATTCTGCGATAGCTGCTTTC 284 Query 140554 TAAAAACTTTTACGTGTAGT 140573 || |||| || || ||||| Sbjct 283 CAATAACTCTTTCGAGTAGT 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517735924132800