Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_028762.1
Length=161989
Score E
Sequences producing significant alignments: (Bits) Value
seq66703 235 6e-57
>seq66703
Length=1304
Score = 235 bits (260), Expect = 6e-57
Identities = 461/680 (68%), Gaps = 21/680 (3%)
Strand=Plus/Minus
Query 139909 TGATATTGATAATCTTGTATCTCAAAATCATCTACGGTAACCCAGGTTTCAATATCTTCT 139968
||||| ||||| ||| | |||||||| || | || ||||| || |||||||||||
Sbjct 937 TGATACTGATACCCTTCCACTTCAAAATCGTCCAATGTTACCCATGTCTCAATATCTTCG 878
Query 139969 AAAGATTGAATGTTATCATTAATAATAAGTTTTGGTGCCTCAAATGGCTCTCTAGAGATA 140028
| ||| | ||| | | ||||| |||||| || || | | || || | | |
Sbjct 877 AGAGACTTAATTTCAGGGTTAATGTGAAGTTTAGGGGCTGGATACGGTTCGC--GTTNCA 820
Query 140029 TGTTCTGGAACCAATTTAAGTTGGTCTTCATAGATATGAGCATTTGTAATTTTATGAAAT 140088
|| | | | |||| | ||| |||||||| ||||| |||||| || |||||| |
Sbjct 819 CGT-CACGCATTAATTGTAATTGATCTTCATAAATATGTGCATTTACGATCTTATGATAA 761
Query 140089 ACACGCCCAAATTTATTGCCGGTAATTTGTGCCATTA-AGCGTAATAAAACATAACACT- 140146
| || | | ||| |||||||| ||||| | ||| || ||| | ||||||
Sbjct 760 GCTTTTCCGGCCTCGTGGCCCGTAATTTGAGCCATGAGAGC-TAGTAAGGTA-AACACTT 703
Query 140147 GTACCATATTAAAATTTAATCCCAATGGGACATCACATGATCTTTGGTATGAAGTTAAAT 140206
| | | |||||||||| || ||||| ||||||||||| | ||| ||||||| ||||
Sbjct 702 GAATCTGATTAAAATTTTGACCTAATGGTACATCACATGAACGTTGTGATGAAGTCAAAT 643
Query 140207 ATAATGTGCTAT-TAACTAAAGAAAAATTATGTGTATGCATACATGGACGCAAACATCCT 140265
| | ||| | |||| || ||||| |||| ||||||||||| ||||| ||||||||
Sbjct 642 AAAGCTTGCCACCTAAC-AACGAAAATGTATGAGTATGCATACAAGGACGTAAACATCCC 584
Query 140266 AAGTCAAATTCACCTGGGTTCCAGAAAGTAATAATTTCTCCACGGTCATCAATACCTTGG 140325
| | ||| |||||||| || |||| || | |||||| || |||||||||||||| |
Sbjct 583 ATATGAAACTCACCTGGATTGTAGAAGGTTAGAATTTCACCTCGGTCATCAATACCGTTT 524
Query 140326 CTTAAATTATCATATACTTTTCTTAGTTGGT------------CTACAGAACCATTCCAA 140373
| || |||||||| | || || |||| |||| ||| | |||
Sbjct 523 CGCAAGTTATCATAGATCTTATGAAGCTGGTCAAACTCCTCTCCTACTGAATTACGCCAC 464
Query 140374 GAACGTCCTTGGACACCGTAAACACGACCCATATCATCGGGTCCTTTACGATTAGGATTA 140433
|| || || ||||| ||||| || ||||||||||| |||||||||| |||||||
Sbjct 463 CTGCGCCCCTGTACACCATAAACTCGGCCCATATCATCCTTACCTTTACGATAAGGATTA 404
Query 140434 TTTAACCATGATTCGTTNNNnnnnnnnNNNNNNNNCCATGTATTACACCCAATCTCACGA 140493
|||||| | ||| || |||||||||||| ||||| | |||
Sbjct 403 GCTAACCAAGCTTCATTTTCATTGGCATTAGCGTTCCATGTATTACATCCAATAGCTCGA 344
Query 140494 AATTGTGCAGCACTTGAATACCCACGAAGATATCCTAGCAGTTCAGCAATAGCAGCTTTA 140553
|| || || || || ||| ||||| ||||| |||| | ||| || ||||| |||||
Sbjct 343 AACTGAGCTGCGCTATCATAACCACGTAGATACCCTAATAATTCTGCGATAGCTGCTTTC 284
Query 140554 TAAAAACTTTTACGTGTAGT 140573
|| |||| || || |||||
Sbjct 283 CAATAACTCTTTCGAGTAGT 264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517735924132800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |