Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq66703 246 4e-60 >seq66703 Length=1304 Score = 246 bits (272), Expect = 4e-60 Identities = 370/515 (72%), Gaps = 12/515 (2%) Strand=Plus/Plus Query 17016 GCTATTGCTGAACTGCTTGGATATCTACGAGGATACGACAATGCTGCCGATTTTCGAGCC 17075 ||||| || ||| | | || |||||||| || || || | || || | |||||||| Sbjct 291 GCTATCGCAGAATTATTAGGGTATCTACGTGGTTATGATAGCGCAGCTCAGTTTCGAGCT 350 Query 17076 ATAGGTTGTAACACATGGAATGCTAACGCCAACGAAAACGAAGCTTGGTTGAAGAATCCC 17135 || || ||||| |||||||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct 351 ATTGGATGTAATACATGGAACGCTAATGCCAATGAAAATGAAGCTTGGTTAGCTAATCCT 410 Query 17136 AATCGTAAAGGTGAGGACGATATGGGACGAGTGTATGGCGTTCAGGGTCGTCAGTGGACA 17195 ||||||||||| |||| |||||||| ||||| ||||| || ||||| || |||| Sbjct 411 TATCGTAAAGGTAAGGATGATATGGGCCGAGTTTATGGTGTACAGGGGCGCAGGTGGCGT 470 Query 17196 AA--CATGTATGGCGATTCACTTGACCAATTGCGCAAAATATACGATAATCTTCGAAATC 17253 || || ||| || || ||||||| | | || || || ||||| | ||||| Sbjct 471 AATTCA-GTA-GGAGAGGAGTTTGACCAGCTTCATAAGATCTATGATAACTTGCGAAACG 528 Query 17254 GAAAAGATGACCGTGGTGAAATTCTGACTTTCTGGAATCCAGGTGAATTCGAATTCGGAT 17313 | | |||||||| ||||||||||| || |||| ||||||||||| || | | |||| Sbjct 529 GTATTGATGACCGAGGTGAAATTCTAACCTTCTACAATCCAGGTGAGTTTCATATGGGAT 588 Query 17314 GTCTGCGTCCTTGTATGCACACCCAT-CAATTCAGTATTCTAGGTGATAAGCTTTATCTG 17372 || | |||||||||||||| || ||| || || || | |||||| ||||||||| || Sbjct 589 GTTTACGTCCTTGTATGCATACTCATACATTTTCGT-TGTTAGGTGGCAAGCTTTATTTG 647 Query 17373 AACAGTTTTCAGAGAAGTAA--CGATCTGCTATTAGGTCAGGTTTTCAATCAGATTC-AG 17429 | | ||| | | | ||| | | ||||||||| ||| |||||||||| || Sbjct 648 A--CTTCATCACAACGTTCATGTGATGTACCATTAGGTCAAAATTTTAATCAGATTCAAG 705 Query 17430 TGTTTTGTCTTGCTCAAACTGATGGCTCAAATTACAGGATTAAAACCTGGAAAGGCTTAT 17489 || ||| ||| || || |||||||||||||| || | | ||||| |||||| Sbjct 706 TG-TTTACCTTACTAGCTCTCATGGCTCAAATTACGGGCCACGAGGCCGGAAAAGCTTAT 764 Query 17490 CATAAAATTGTAAATGTTCACATTTACGATAATCA 17524 ||||| || ||||||| || ||||| || |||| Sbjct 765 CATAAGATCGTAAATGCACATATTTATGAAGATCA 799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582172785656000