Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_028855.1 Length=44846 Score E Sequences producing significant alignments: (Bits) Value seq23535 264 3e-66 seq75598 113 1e-20 >seq23535 Length=854 Score = 264 bits (292), Expect = 3e-66 Identities = 412/589 (70%), Gaps = 0/589 (0%) Strand=Plus/Minus Query 21925 CCCATATCCAGCGATAAGTTACATCATCAAGATTGGCTTGATCTCGTCTGCGCTCTAAGT 21984 |||||||||||||||| ||| |||| || |||||||||| |||| | || ||||| | | Sbjct 751 CCCATATCCAGCGATATGTTTCATCGTCTAGATTGGCTTTATCTTGCCTACGCTCAATTT 692 Query 21985 CAAGAACACGAGGAAACCACGGATTATCAGAATAGTTCATTTCCACACACATACCAATAA 22044 | | ||| |||||||| ||||| ||||| || ||||| || || | | |||||| | Sbjct 691 CTAAAACCTCTGGAAACCAAGGATTGTCAGAGTAATTCATCTCTACGCCAACACCAATTA 632 Query 22045 GTTCGCCTGTTTCATCATCGTATATTTCGGGATGATTAAACCGAACATCCGTAGGGCTGC 22104 ||| || || ||||| |||||| |||| ||| || || | || Sbjct 631 ATTCACCGGTCAGGTCATCAAATATTTGATCATGACGAAAGCGTCTGCTTGTTGCACTAT 572 Query 22105 CGCGCTTCTCAGGGTTATAGGTAATATATACTTGTGAATTTTCCTCTCGCACTGTTGGCA 22164 ||||| | ||||| || | ||||| | || | ||| || || || ||||| || || | Sbjct 571 CGCGCCTTTCAGGATTCCATGTAATCCAAACCTCTGAGTTATCTTCACGCACAGTGGGTA 512 Query 22165 ATAGTTTTCTATACGCCATCTCAGATACGTTCTCAGCTTCATCAACCCAGCACAGTAAAA 22224 || ||| | | || | ||| || || | ||||| |||||||||||||| || |||| Sbjct 511 GTAATTTACGCCAAGCAAGCTCTGAAACATCTTCAGCCTCATCAACCCAGCAAAGCAAAA 452 Query 22225 TACGTGCTTTGGATTTGATACTGTCCAGATTGTGTCTAAGACCTGCAAACGTGTATTCAA 22284 |||| ||||| ||||| || |||| || || || | ||||| ||||| || | Sbjct 451 TACGCGCTTTAGATTTAATGCTGTTTAGGTTATGCCGTAGACCAGCAAAGCCATAACTGA 392 Query 22285 CCAGTCTGTTTTTAGTCCTGATGTAGTTCTCGCCCATATCGTAGTAATCATTCAGAAAAG 22344 | | ||||||| || | || || | || || ||||| || |||| ||||||||| | Sbjct 391 CTCTTTTGTTTTTGGTACGTATATAACTTTCACCAATATCATAATAATTATTCAGAAATG 332 Query 22345 GAACAGACCTGATAGCCTGCTTGATTTCCTCTAATGATGAGTCTGCTAGGGAGTTTAAGT 22404 | ||| || |||||||||||||| || | ||| || || | || | ||| | | Sbjct 331 GTGTGGACTGTATCGCCTGCTTGATTTCTTCCATTGAAGATTCAGAAAGCGTGTTCATGA 272 Query 22405 GTTCACGCGCACAAAGAATCACACCACTCTGGCCACTCTCAGCAAACATATAGCCCTTGA 22464 ||||||||||| || |||| ||||| | ||| ||||| ||||| ||||||| Sbjct 271 ATTCACGCGCACCGAGGATCATTCCACTGATTTGAGCCTCTGCAAAGATATAACCCTTGA 212 Query 22465 TTGCAGTCATCAGCGCAAATGATCGAGTCTTACCACTACCTCGACCGCC 22513 | |||||||| || ||||||||||||||||| || || ||||| || Sbjct 211 TAGCAGTCATAAGTGCAAATGATCGAGTCTTGGCAGATCCACGACCACC 163 >seq75598 Length=201 Score = 113 bits (124), Expect = 1e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 21466 CTTTTTTGTACGAGTAATCACGGAACTCTTTTAGCGTTTCTTTGCATCGTGAATGAATGT 21525 ||||||| || ||||| | ||||| |||| ||||||||||| || | |||||| | Sbjct 201 CTTTTTTATATGAGTAGTTTTTAAACTCATTTAATGTTTCTTTGCAGCGAGTATGAATAT 142 Query 21526 AGACTTTCTTAAACGATTTGATGAATTCAATACCATCCTCAACAGAACCTTTGCCCTTCT 21585 |||| |||||| ||| | || ||| | || ||||||||||| ||||||||||| |||| Sbjct 141 AGACACGCTTAAATGATCTAATAAATGCTATTCCATCCTCAACCGAACCTTTGCCTTTCT 82 Query 21586 CAACAGGCGC-AATTCTACGCAAACCTTTCTTTTTTAAATGACTAATAGATTCAGGACGA 21644 | ||| || | ||||| || || || |||||||||| || || || || | Sbjct 81 C-ACACGCTCTGATTCTCTTTAAGCCCTTACGACTTAAATGACTTATTGACTCTGGCCTC 23 Query 21645 GCGCTATCCGCATAAA 21660 ||| |||| ||||||| Sbjct 22 GCGTTATCTGCATAAA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143253946926720