Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_028995.1
Length=43216
Score E
Sequences producing significant alignments: (Bits) Value
seq23535 320 5e-83
seq75598 149 2e-31
>seq23535
Length=854
Score = 320 bits (354), Expect = 5e-83
Identities = 511/739 (69%), Gaps = 41/739 (6%)
Strand=Plus/Plus
Query 10656 TAATCCTACTGTAATTGAATTGGTGGCTCATAATGTCGAAA---------GTTCAGATTA 10706
||| |||||| |||||||| ||||||| | |||||| ||| || || |||
Sbjct 41 TAAGCCTACTTTAATTGAACTGGTGGCACCCAATGTCAAAACAGCAGAAGGTGCAAATTG 100
Query 10707 AGTTGCCGCCTAAACTTGTTCCAGTCTTTTCTGCTCAAGATGTGCGATACCGTCAAAGCT 10766
| | || |||||| | |||| | ||| | | |||||| || | | |
Sbjct 101 AACTACCACCTAAATTAATTCCGCTATTTAGCGAGTCCGGTGTGCGCTATAGATCATCAT 160
Query 10767 GGGGAGGTCGAGGTTCAGGTAAGACTCGTTCGTTTGCAAAAATGACAGCCGTTAAAGGCT 10826
|||| ||||| || || | |||||||| || |||||| ||||| || | || || |
Sbjct 161 GGGGTGGTCGTGGATCTGCCAAGACTCGATCATTTGCACTTATGACTGCTATCAAGGGTT 220
Query 10827 ATATGTTTGCTGAGATGGGTGTGAGTGGAACTTTGCTTTGTGGTCGTGAGTTTATGAATA 10886
|||| ||||| ||| | ||||||| | || ||| ||||| || ||||| |
Sbjct 221 ATATCTTTGCAGAGGCTCAAATCAGTGGAATGATCCTCGGTGCGCGTGAATTCATGAACA 280
Query 10887 CGCTTGCTGATTCTTCAATGGAAGAAATTAAGCAGGCGATTCGAGAAGA-ACCGTTTCTA 10945
||||| |||| ||||||||||||||||| ||||||||||| | || | ||| |||||
Sbjct 281 CGCTTTCTGAATCTTCAATGGAAGAAATCAAGCAGGCGATAC-AGTCCACACCATTTCTG 339
Query 10946 AATGATTATTATGAAATGGGTGAAAACTACATAAGAACCAAGAATAAGCGTGTGACTTAT 11005
||| |||||||||| || ||||||| || ||| | ||||| || || | || | ||||
Sbjct 340 AATAATTATTATGATATTGGTGAAAGTTATATACGTACCAAAAACAAAAGAGTCAGTTAT 399
Query 11006 TCGTTTTGTGGTTTGCGTCATAACTTAGACAGTATTAAATCTAAAGCGCGTATTTTGCTG 11065
||| |||| | || |||||| || |||| ||||||||||||||||||||||||||
Sbjct 400 GGCTTTGCTGGTCTACGGCATAACCTAAACAGCATTAAATCTAAAGCGCGTATTTTGCTT 459
Query 11066 AGTTGGGTGGATGAGGCTGAGACGGTTTCAGAAATGGCTTGGAGAAAGCTACTACCAACG 11125
| ||||| ||||||||||| |||||||| | |||||| | || ||||||| ||
Sbjct 460 TGCTGGGTTGATGAGGCTGAAGATGTTTCAGAGCTTGCTTGGCGTAAATTACTACCCACT 519
Query 11126 GTTCGAGAAGAAATACACTTACCTAATGGTAAAATTGTTTATTCAGAGGTGTGGATTACA 11185
|| || ||||| | | |||||||| |||||||||
Sbjct 520 GTGCGTGAAGA---------------------------TAACTCAGAGGTTTGGATTACA 552
Query 11186 TGGAACCCCGAGAAGCGAGATAGTCCAACTTCGACGCGATTTAGACATGAAGAAATATTA 11245
||||| || || | ||| |||||| |||| | || ||| | ||||| |||||||
Sbjct 553 TGGAATCCTGAAAGGCGCGATAGTGCAACAAGCAGACGCTTTCGTCATGATCAAATATTT 612
Query 11246 AGTGA---GGATGGTGTCTTAATTGGCATTGGTGCTGAAATGAATTACATGGATAATCCG 11302
||| | |||| |||||||| |||| | || ||||||||| || |||||
Sbjct 613 GATGACCTGACCGGTGAATTAATTGGTGTTGGCGTAGAGATGAATTACTCTGACAATCCT 672
Query 11303 TGGTTTCCGCATGTTCTTGATTTGGAGCGCAAACGAGATCAAGCCAATCTTGATGATGTA 11362
|||||||| | ||| | || | ||||| | | |||| |||||||||| || |||| |
Sbjct 673 TGGTTTCCAGAGGTTTTAGAAATTGAGCGTAGGCAAGATAAAGCCAATCTAGACGATGAA 732
Query 11363 ACTTATCGCTGGATTTGGG 11381
|| ||||||||||| ||||
Sbjct 733 ACATATCGCTGGATATGGG 751
>seq75598
Length=201
Score = 149 bits (164), Expect = 2e-31
Identities = 152/196 (78%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 11646 TTTATGCTGATAGCGCCAGACCCGAATCAATCAGTCATCTAAAGAAAAAAGGCTTGCTTA 11705
||||||| |||| ||| || || || ||||| |||||| ||| || ||||| |
Sbjct 7 TTTATGCAGATAACGCGAGGCCAGAGTCAATAAGTCATTTAAGTCGTAAGGGCTTAAAGA 66
Query 11706 GAATCAGGGCTGTG-GAAAAAGGTAAGGGTTCGGTAGAGGATGGTATTGAGTTTATTAAG 11764
||||||| || ||| || ||||| || |||||||| |||||||| || | |||||||
Sbjct 67 GAATCAGAGC-GTGTGAGAAAGGCAAAGGTTCGGTTGAGGATGGAATAGCATTTATTAGA 125
Query 11765 TCCTTTAAACGGGTTTACATTCATCCGCGCTGCAAAGAAACAATAAAAGAGTTTAGAGAT 11824
|| ||||| || || || |||||| | ||||||||||||||| |||| ||||||| | |
Sbjct 126 TCATTTAAGCGTGTCTATATTCATACTCGCTGCAAAGAAACATTAAATGAGTTTAAAAAC 185
Query 11825 TACTCATACAAAAAAG 11840
|||||||| |||||||
Sbjct 186 TACTCATATAAAAAAG 201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138042736127520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |