Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_028995.1 Length=43216 Score E Sequences producing significant alignments: (Bits) Value seq23535 320 5e-83 seq75598 149 2e-31 >seq23535 Length=854 Score = 320 bits (354), Expect = 5e-83 Identities = 511/739 (69%), Gaps = 41/739 (6%) Strand=Plus/Plus Query 10656 TAATCCTACTGTAATTGAATTGGTGGCTCATAATGTCGAAA---------GTTCAGATTA 10706 ||| |||||| |||||||| ||||||| | |||||| ||| || || ||| Sbjct 41 TAAGCCTACTTTAATTGAACTGGTGGCACCCAATGTCAAAACAGCAGAAGGTGCAAATTG 100 Query 10707 AGTTGCCGCCTAAACTTGTTCCAGTCTTTTCTGCTCAAGATGTGCGATACCGTCAAAGCT 10766 | | || |||||| | |||| | ||| | | |||||| || | | | Sbjct 101 AACTACCACCTAAATTAATTCCGCTATTTAGCGAGTCCGGTGTGCGCTATAGATCATCAT 160 Query 10767 GGGGAGGTCGAGGTTCAGGTAAGACTCGTTCGTTTGCAAAAATGACAGCCGTTAAAGGCT 10826 |||| ||||| || || | |||||||| || |||||| ||||| || | || || | Sbjct 161 GGGGTGGTCGTGGATCTGCCAAGACTCGATCATTTGCACTTATGACTGCTATCAAGGGTT 220 Query 10827 ATATGTTTGCTGAGATGGGTGTGAGTGGAACTTTGCTTTGTGGTCGTGAGTTTATGAATA 10886 |||| ||||| ||| | ||||||| | || ||| ||||| || ||||| | Sbjct 221 ATATCTTTGCAGAGGCTCAAATCAGTGGAATGATCCTCGGTGCGCGTGAATTCATGAACA 280 Query 10887 CGCTTGCTGATTCTTCAATGGAAGAAATTAAGCAGGCGATTCGAGAAGA-ACCGTTTCTA 10945 ||||| |||| ||||||||||||||||| ||||||||||| | || | ||| ||||| Sbjct 281 CGCTTTCTGAATCTTCAATGGAAGAAATCAAGCAGGCGATAC-AGTCCACACCATTTCTG 339 Query 10946 AATGATTATTATGAAATGGGTGAAAACTACATAAGAACCAAGAATAAGCGTGTGACTTAT 11005 ||| |||||||||| || ||||||| || ||| | ||||| || || | || | |||| Sbjct 340 AATAATTATTATGATATTGGTGAAAGTTATATACGTACCAAAAACAAAAGAGTCAGTTAT 399 Query 11006 TCGTTTTGTGGTTTGCGTCATAACTTAGACAGTATTAAATCTAAAGCGCGTATTTTGCTG 11065 ||| |||| | || |||||| || |||| |||||||||||||||||||||||||| Sbjct 400 GGCTTTGCTGGTCTACGGCATAACCTAAACAGCATTAAATCTAAAGCGCGTATTTTGCTT 459 Query 11066 AGTTGGGTGGATGAGGCTGAGACGGTTTCAGAAATGGCTTGGAGAAAGCTACTACCAACG 11125 | ||||| ||||||||||| |||||||| | |||||| | || ||||||| || Sbjct 460 TGCTGGGTTGATGAGGCTGAAGATGTTTCAGAGCTTGCTTGGCGTAAATTACTACCCACT 519 Query 11126 GTTCGAGAAGAAATACACTTACCTAATGGTAAAATTGTTTATTCAGAGGTGTGGATTACA 11185 || || ||||| | | |||||||| ||||||||| Sbjct 520 GTGCGTGAAGA---------------------------TAACTCAGAGGTTTGGATTACA 552 Query 11186 TGGAACCCCGAGAAGCGAGATAGTCCAACTTCGACGCGATTTAGACATGAAGAAATATTA 11245 ||||| || || | ||| |||||| |||| | || ||| | ||||| ||||||| Sbjct 553 TGGAATCCTGAAAGGCGCGATAGTGCAACAAGCAGACGCTTTCGTCATGATCAAATATTT 612 Query 11246 AGTGA---GGATGGTGTCTTAATTGGCATTGGTGCTGAAATGAATTACATGGATAATCCG 11302 ||| | |||| |||||||| |||| | || ||||||||| || ||||| Sbjct 613 GATGACCTGACCGGTGAATTAATTGGTGTTGGCGTAGAGATGAATTACTCTGACAATCCT 672 Query 11303 TGGTTTCCGCATGTTCTTGATTTGGAGCGCAAACGAGATCAAGCCAATCTTGATGATGTA 11362 |||||||| | ||| | || | ||||| | | |||| |||||||||| || |||| | Sbjct 673 TGGTTTCCAGAGGTTTTAGAAATTGAGCGTAGGCAAGATAAAGCCAATCTAGACGATGAA 732 Query 11363 ACTTATCGCTGGATTTGGG 11381 || ||||||||||| |||| Sbjct 733 ACATATCGCTGGATATGGG 751 >seq75598 Length=201 Score = 149 bits (164), Expect = 2e-31 Identities = 152/196 (78%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 11646 TTTATGCTGATAGCGCCAGACCCGAATCAATCAGTCATCTAAAGAAAAAAGGCTTGCTTA 11705 ||||||| |||| ||| || || || ||||| |||||| ||| || ||||| | Sbjct 7 TTTATGCAGATAACGCGAGGCCAGAGTCAATAAGTCATTTAAGTCGTAAGGGCTTAAAGA 66 Query 11706 GAATCAGGGCTGTG-GAAAAAGGTAAGGGTTCGGTAGAGGATGGTATTGAGTTTATTAAG 11764 ||||||| || ||| || ||||| || |||||||| |||||||| || | ||||||| Sbjct 67 GAATCAGAGC-GTGTGAGAAAGGCAAAGGTTCGGTTGAGGATGGAATAGCATTTATTAGA 125 Query 11765 TCCTTTAAACGGGTTTACATTCATCCGCGCTGCAAAGAAACAATAAAAGAGTTTAGAGAT 11824 || ||||| || || || |||||| | ||||||||||||||| |||| ||||||| | | Sbjct 126 TCATTTAAGCGTGTCTATATTCATACTCGCTGCAAAGAAACATTAAATGAGTTTAAAAAC 185 Query 11825 TACTCATACAAAAAAG 11840 |||||||| ||||||| Sbjct 186 TACTCATATAAAAAAG 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138042736127520