Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq74126 289 9e-74 >seq74126 Length=69924 Score = 289 bits (320), Expect = 9e-74 Identities = 712/1061 (67%), Gaps = 43/1061 (4%) Strand=Plus/Plus Query 43475 TGGTACGGTCTGCGGGCAAAGCTGCAGGCC---CCTACCAGCTATGAGGGCGTTACGGTA 43531 |||||||| ||||| | ||| || || | || || |||| | | | | || || Sbjct 31030 TGGTACGGCCTGCGCGGCAAGATGATGGGCGCGCCGACGCGCTACAACGACATGACCGTT 31089 Query 43532 ATGGCGGTGCGTTTGCGCGGCGGTGATCGGCTTGCCTCGCAATCTGAGGCGCTTGTCTCG 43591 || |||||||| ||||| ||| || ||||| | |||||||||| || ||| Sbjct 31090 ATCGCGGTGCGCGTGCGCAACGGCGACCGGCTCTCGGCGCAATCTGAAAGCCTGGTCAGT 31149 Query 43592 GTCGAGGCGACTCGTGTTCTGCCTGTGCGAAGCGGCGGCGCCTGGGATGTGGAGACGCCG 43651 |||||||| || ||||| ||||| ||||| ||||| ||||||| |||||||| ||| Sbjct 31150 GTCGAGGCAACACGTGTACTGCCGGTGCGCTCGGGCGGTGCCTGGGCAGTGGAGACACCG 31209 Query 43652 ACTCGCGACATCGTGCCGTGGATCATCCACGTCGCGCACTCGATTGGTTACACCGATGAC 43711 || || || |||||||||||| || || || |||| | ||| || |||||||||| | Sbjct 31210 ACGCGGGATATCGTGCCGTGGTTCCTCTACATCGCAAAGTCGGCCGGCTACACCGATGCC 31269 Query 43712 GATCTGGACATGGCCGAGTTGGACCGCCTGCACGCCATATGGGCCGCG--CGTGGCGATC 43769 |||||||| ||| |||| ||||||| || || | || || ||||| || ||||| Sbjct 31270 GATCTGGATCTGGTCGAGCTGGACCGACTTCATG--ATGTGTACCGCGCACGCGGCGACA 31327 Query 43770 ACTACGAC--GCCG--TGATCGACTCAGCGAGCACAGTAAAGCAGTCGCTGCTCGAGGCA 43825 || ||| | || |||| ||| || || || || || | || || ||| || Sbjct 31328 CCTTTGACATGACGATTGAT-GAC---GCCAGTACGGTCAAAGACGCGATGAACGACGCG 31383 Query 43826 CTGCAGGCTGGATTCGCCGACTTCACCATCGACCGCGGCCTGATTCGACCTGTTCGAGAC 43885 ||| || || ||| | || | |||||| ||||||| ||| | | || || || ||| Sbjct 31384 CTGGCCGCCGGGTTCTCAGAACTGACCATCAACCGCGGGCTGCTGCTGCCGGTGCGCGAC 31443 Query 43886 GAGCCGCGCACGGTCATGGAGCACCCGTACACGCCGCAGAACATGACC-AAGGCCTTGA- 43943 |||||||||||| | |||||| |||||||||||||||||||||| ||||||| | Sbjct 31444 GAGCCGCGCACGCAGTTCGAGCACATGTACACGCCGCAGAACATGACCAAAGGCCTCAAA 31503 Query 43944 -GCCGGCAGTTCTCTGCGCTCAAGCCGGACGACTTCGACGGGGTAGACGTTGAGTACGTC 44002 ||| | | | | | | || ||| ||||| || ||||| || || || |||||| || Sbjct 31504 CGCCAACTGGTGT-TCCCATCGAGC--GACGATTTTGACGGTGTTGATGTCGAGTACTTC 31560 Query 44003 GACAACCGCACTTGGCAGAAGGAGACAGTTCAGTGCCGTCTGCCAGGTGACGCAGGTTTG 44062 | ||| ||| ||| || || | ||||| ||| |||||| || Sbjct 31561 AGCTCGATCACCTGGGCATGGGAAACCGTCGAATGCCGCTGGCCGGGTGACCTTGGCAAC 31620 Query 44063 CGTGTCGAGAAGCTGAAGCTGGACGGCGTTACCGGCAAGACGCAGGCTTGGCGGATCGGG 44122 ||||||||| | ||| || ||| | ||| || | || ||||| ||||| Sbjct 31621 AAGGTCGAGAAGGTCAAGGTGCCGGGCATCGCCGATCGCACCCGCGCCTGGCGCATCGGC 31680 Query 44123 ATGCGGCGCCGGATGG--AGCAAAAGTACCGGCGCTGGTCGTACAGCTTTGGCACTGAGC 44180 ||||| ||||| ||| | || |||||||| | | || ||| | || ||| Sbjct 31681 ATGCGCCGCCG--TGGTCACCAGAAGTACCGCAACGACACTTATCGCTGGGAAACCGAGT 31738 Query 44181 TGGACGCGCTGAACAGCCGTTATCTCAGCTACGTTCCGCTTCAG--GATGACGTGCCTGG 44238 |||||||| ||| | | || || ||||| | | || || || || ||||| || Sbjct 31739 ATGACGCGCTCAACTCCAGCTACCTGAGCTA--TGCGGCAGTAGCCGACGATGTGCCGGG 31796 Query 44239 CTACGGCCAGAGCGCGCTGATGCTGAG---CTACGACA------GCGGCA---TCATCGA 44286 ||||| |||||| | | | ||| | || || | || | || | || Sbjct 31797 GTACGGACAGAGCTCATTACTTGAGAGTGCCACCGGCACTCCCGGAGGGATTGTCCTGGA 31856 Query 44287 GTCGTCCGAGCCGTTCGACTGGTCGGCTGGCGGCGCGCATGTGGTCGGGATTCGCCGGCC 44346 | || || || |||||||||||||| |||||||||||| || ||| | | ||| ||| Sbjct 31857 GAGCTCTGAACCCTTCGACTGGTCGGCCGGCGGCGCGCATATGATCGCGCTGCGCAGGCT 31916 Query 44347 GGATGGCACGCTATCCGGCCCATACACGGCGACGCGCATCGATGACTATCGACTGTCCAT 44406 || ||| |||| || || |||| | ||||| ||| ||||| | || | | | Sbjct 31917 CGACGGCTCGCTGTCTGGTCCATGGCCCGCGACTTTCATAGATGAGTGCCGCGTCAGCGT 31976 Query 44407 -CAGTGGTCTGGACTTCGAGCCCGACACGTCGTGGAGCATCGAGCCGCCGCATCTGCTAT 44465 ||| | |||||||| || || || | ||| | || || ||||| || ||| | | Sbjct 31977 GCAG-AGCCTGGACTTTGATCCAGAGATCATTTGGGGGATTGAACCGCCACACCTGTTGT 32035 Query 44466 TCGGACCGGTCAACCGCTGGAGCTATCCGGCGCTGATCACG 44506 |||| ||| |||| |||||||||||||| ||||| ||||| Sbjct 32036 TCGGTCCGCTCAATCGCTGGAGCTATCCCACGCTGGTCACG 32076 Score = 91.5 bits (100), Expect = 5e-14 Identities = 274/417 (66%), Gaps = 6/417 (1%) Strand=Plus/Plus Query 41063 GAGCAAGTCTATGCATCGGGCGGCGACGTGATCATTCACACACTGGAGATCACGTGCGCT 41122 |||| || ||||| ||||| || ||||||||||| |||| || ||| | |||||| | Sbjct 27896 GAGCGTGTGTATGCCTCGGGTGGTGACGTGATCATCGACACCCTAGAGTTGACGTGCCCG 27955 Query 41123 GCCTGGGCTGATCCAATCCTGCTGTGCGAGGGGTTCGAGAATCAGTCTGTGATCGACGAG 41182 |||||| | || || | | | || | || || || || | | | || |||| Sbjct 27956 GCCTGGACGGAACCGGTGTCGATCTGTGGCGGCTTTGAAGATGTGGCCTGCACCGCCGAG 28015 Query 41183 AACGGGCGCCCGCTG-ACCTTCGAGGCGGCGGCTTTCCAGC-TCGCTGAGCCCGAGCGCA 41240 |||| ||| ||| | || | || ||| | | ||||| || || | Sbjct 28016 GACGGCCGCAGCCTGCAACTAATTGCCGCTGGCATCGACGTATCGCTA--CCGAAGAAGA 28073 Query 41241 GCAACCGCGGCAGCCAGACGCTCGACTTCGCTGTCGATGGAGTCATGGGCACGGCACAGC 41300 ||||| ||| |||||||||||| ||||||| |||| || |||| ||| |||| Sbjct 28074 GCAACAGCGCGAGCCAGACGCTCAACTTCGCCATCGACAACGTGCTGGGGGAGGCGCAGC 28133 Query 41301 AGAAGGTCGACGCGGCGCTAGAGGCAGAGGAGCGCATCACGCTGATCTACCGCAAGTTCC 41360 |||| | ||| ||| | ||||| || || ||||||| | ||||||| | | Sbjct 28134 AGAAAATGGACCAGGCCAAGGCGGCAGGGGCGCCGATCACGCAAACCTACCGCCGCTATC 28193 Query 41361 TCGCCAGCAACCTGTCTGAGCCGGCCGAGCGCCCGTATCGCATGACCATCCTT-GGCGGC 41419 | |||||| ||||||| | ||||| |||| ||| ||||||| | |||| |||| | Sbjct 28194 TGGCCAGCGACCTGTCGGCACCGGCAGAGCCGCCGATCCGCATGA-AAGCCTTCGGCGCC 28252 Query 41420 GAGATGAATGGCTCGACGGTCCAGCTGCAGGCCGGGTTCTTCGACCTGATCAACCGG 41476 | || | ||| | || || || | ||| || | | ||||||||| |||||| Sbjct 28253 GGTATCGAGGGCACCACCGTGCAAATCACGGCGGGCTACGGCGACCTGATTAACCGG 28309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155466723155520