Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_029066.1
Length=48666
Score E
Sequences producing significant alignments: (Bits) Value
seq74126 289 9e-74
>seq74126
Length=69924
Score = 289 bits (320), Expect = 9e-74
Identities = 712/1061 (67%), Gaps = 43/1061 (4%)
Strand=Plus/Plus
Query 43475 TGGTACGGTCTGCGGGCAAAGCTGCAGGCC---CCTACCAGCTATGAGGGCGTTACGGTA 43531
|||||||| ||||| | ||| || || | || || |||| | | | | || ||
Sbjct 31030 TGGTACGGCCTGCGCGGCAAGATGATGGGCGCGCCGACGCGCTACAACGACATGACCGTT 31089
Query 43532 ATGGCGGTGCGTTTGCGCGGCGGTGATCGGCTTGCCTCGCAATCTGAGGCGCTTGTCTCG 43591
|| |||||||| ||||| ||| || ||||| | |||||||||| || |||
Sbjct 31090 ATCGCGGTGCGCGTGCGCAACGGCGACCGGCTCTCGGCGCAATCTGAAAGCCTGGTCAGT 31149
Query 43592 GTCGAGGCGACTCGTGTTCTGCCTGTGCGAAGCGGCGGCGCCTGGGATGTGGAGACGCCG 43651
|||||||| || ||||| ||||| ||||| ||||| ||||||| |||||||| |||
Sbjct 31150 GTCGAGGCAACACGTGTACTGCCGGTGCGCTCGGGCGGTGCCTGGGCAGTGGAGACACCG 31209
Query 43652 ACTCGCGACATCGTGCCGTGGATCATCCACGTCGCGCACTCGATTGGTTACACCGATGAC 43711
|| || || |||||||||||| || || || |||| | ||| || |||||||||| |
Sbjct 31210 ACGCGGGATATCGTGCCGTGGTTCCTCTACATCGCAAAGTCGGCCGGCTACACCGATGCC 31269
Query 43712 GATCTGGACATGGCCGAGTTGGACCGCCTGCACGCCATATGGGCCGCG--CGTGGCGATC 43769
|||||||| ||| |||| ||||||| || || | || || ||||| || |||||
Sbjct 31270 GATCTGGATCTGGTCGAGCTGGACCGACTTCATG--ATGTGTACCGCGCACGCGGCGACA 31327
Query 43770 ACTACGAC--GCCG--TGATCGACTCAGCGAGCACAGTAAAGCAGTCGCTGCTCGAGGCA 43825
|| ||| | || |||| ||| || || || || || | || || ||| ||
Sbjct 31328 CCTTTGACATGACGATTGAT-GAC---GCCAGTACGGTCAAAGACGCGATGAACGACGCG 31383
Query 43826 CTGCAGGCTGGATTCGCCGACTTCACCATCGACCGCGGCCTGATTCGACCTGTTCGAGAC 43885
||| || || ||| | || | |||||| ||||||| ||| | | || || || |||
Sbjct 31384 CTGGCCGCCGGGTTCTCAGAACTGACCATCAACCGCGGGCTGCTGCTGCCGGTGCGCGAC 31443
Query 43886 GAGCCGCGCACGGTCATGGAGCACCCGTACACGCCGCAGAACATGACC-AAGGCCTTGA- 43943
|||||||||||| | |||||| |||||||||||||||||||||| ||||||| |
Sbjct 31444 GAGCCGCGCACGCAGTTCGAGCACATGTACACGCCGCAGAACATGACCAAAGGCCTCAAA 31503
Query 43944 -GCCGGCAGTTCTCTGCGCTCAAGCCGGACGACTTCGACGGGGTAGACGTTGAGTACGTC 44002
||| | | | | | | || ||| ||||| || ||||| || || || |||||| ||
Sbjct 31504 CGCCAACTGGTGT-TCCCATCGAGC--GACGATTTTGACGGTGTTGATGTCGAGTACTTC 31560
Query 44003 GACAACCGCACTTGGCAGAAGGAGACAGTTCAGTGCCGTCTGCCAGGTGACGCAGGTTTG 44062
| ||| ||| ||| || || | ||||| ||| |||||| ||
Sbjct 31561 AGCTCGATCACCTGGGCATGGGAAACCGTCGAATGCCGCTGGCCGGGTGACCTTGGCAAC 31620
Query 44063 CGTGTCGAGAAGCTGAAGCTGGACGGCGTTACCGGCAAGACGCAGGCTTGGCGGATCGGG 44122
||||||||| | ||| || ||| | ||| || | || ||||| |||||
Sbjct 31621 AAGGTCGAGAAGGTCAAGGTGCCGGGCATCGCCGATCGCACCCGCGCCTGGCGCATCGGC 31680
Query 44123 ATGCGGCGCCGGATGG--AGCAAAAGTACCGGCGCTGGTCGTACAGCTTTGGCACTGAGC 44180
||||| ||||| ||| | || |||||||| | | || ||| | || |||
Sbjct 31681 ATGCGCCGCCG--TGGTCACCAGAAGTACCGCAACGACACTTATCGCTGGGAAACCGAGT 31738
Query 44181 TGGACGCGCTGAACAGCCGTTATCTCAGCTACGTTCCGCTTCAG--GATGACGTGCCTGG 44238
|||||||| ||| | | || || ||||| | | || || || || ||||| ||
Sbjct 31739 ATGACGCGCTCAACTCCAGCTACCTGAGCTA--TGCGGCAGTAGCCGACGATGTGCCGGG 31796
Query 44239 CTACGGCCAGAGCGCGCTGATGCTGAG---CTACGACA------GCGGCA---TCATCGA 44286
||||| |||||| | | | ||| | || || | || | || | ||
Sbjct 31797 GTACGGACAGAGCTCATTACTTGAGAGTGCCACCGGCACTCCCGGAGGGATTGTCCTGGA 31856
Query 44287 GTCGTCCGAGCCGTTCGACTGGTCGGCTGGCGGCGCGCATGTGGTCGGGATTCGCCGGCC 44346
| || || || |||||||||||||| |||||||||||| || ||| | | ||| |||
Sbjct 31857 GAGCTCTGAACCCTTCGACTGGTCGGCCGGCGGCGCGCATATGATCGCGCTGCGCAGGCT 31916
Query 44347 GGATGGCACGCTATCCGGCCCATACACGGCGACGCGCATCGATGACTATCGACTGTCCAT 44406
|| ||| |||| || || |||| | ||||| ||| ||||| | || | | |
Sbjct 31917 CGACGGCTCGCTGTCTGGTCCATGGCCCGCGACTTTCATAGATGAGTGCCGCGTCAGCGT 31976
Query 44407 -CAGTGGTCTGGACTTCGAGCCCGACACGTCGTGGAGCATCGAGCCGCCGCATCTGCTAT 44465
||| | |||||||| || || || | ||| | || || ||||| || ||| | |
Sbjct 31977 GCAG-AGCCTGGACTTTGATCCAGAGATCATTTGGGGGATTGAACCGCCACACCTGTTGT 32035
Query 44466 TCGGACCGGTCAACCGCTGGAGCTATCCGGCGCTGATCACG 44506
|||| ||| |||| |||||||||||||| ||||| |||||
Sbjct 32036 TCGGTCCGCTCAATCGCTGGAGCTATCCCACGCTGGTCACG 32076
Score = 91.5 bits (100), Expect = 5e-14
Identities = 274/417 (66%), Gaps = 6/417 (1%)
Strand=Plus/Plus
Query 41063 GAGCAAGTCTATGCATCGGGCGGCGACGTGATCATTCACACACTGGAGATCACGTGCGCT 41122
|||| || ||||| ||||| || ||||||||||| |||| || ||| | |||||| |
Sbjct 27896 GAGCGTGTGTATGCCTCGGGTGGTGACGTGATCATCGACACCCTAGAGTTGACGTGCCCG 27955
Query 41123 GCCTGGGCTGATCCAATCCTGCTGTGCGAGGGGTTCGAGAATCAGTCTGTGATCGACGAG 41182
|||||| | || || | | | || | || || || || | | | || ||||
Sbjct 27956 GCCTGGACGGAACCGGTGTCGATCTGTGGCGGCTTTGAAGATGTGGCCTGCACCGCCGAG 28015
Query 41183 AACGGGCGCCCGCTG-ACCTTCGAGGCGGCGGCTTTCCAGC-TCGCTGAGCCCGAGCGCA 41240
|||| ||| ||| | || | || ||| | | ||||| || || |
Sbjct 28016 GACGGCCGCAGCCTGCAACTAATTGCCGCTGGCATCGACGTATCGCTA--CCGAAGAAGA 28073
Query 41241 GCAACCGCGGCAGCCAGACGCTCGACTTCGCTGTCGATGGAGTCATGGGCACGGCACAGC 41300
||||| ||| |||||||||||| ||||||| |||| || |||| ||| ||||
Sbjct 28074 GCAACAGCGCGAGCCAGACGCTCAACTTCGCCATCGACAACGTGCTGGGGGAGGCGCAGC 28133
Query 41301 AGAAGGTCGACGCGGCGCTAGAGGCAGAGGAGCGCATCACGCTGATCTACCGCAAGTTCC 41360
|||| | ||| ||| | ||||| || || ||||||| | ||||||| | |
Sbjct 28134 AGAAAATGGACCAGGCCAAGGCGGCAGGGGCGCCGATCACGCAAACCTACCGCCGCTATC 28193
Query 41361 TCGCCAGCAACCTGTCTGAGCCGGCCGAGCGCCCGTATCGCATGACCATCCTT-GGCGGC 41419
| |||||| ||||||| | ||||| |||| ||| ||||||| | |||| |||| |
Sbjct 28194 TGGCCAGCGACCTGTCGGCACCGGCAGAGCCGCCGATCCGCATGA-AAGCCTTCGGCGCC 28252
Query 41420 GAGATGAATGGCTCGACGGTCCAGCTGCAGGCCGGGTTCTTCGACCTGATCAACCGG 41476
| || | ||| | || || || | ||| || | | ||||||||| ||||||
Sbjct 28253 GGTATCGAGGGCACCACCGTGCAAATCACGGCGGGCTACGGCGACCTGATTAACCGG 28309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 155466723155520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |