Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq23781 489 1e-133 seq66935 192 5e-44 seq34278 192 5e-44 >seq23781 Length=1882226 Score = 489 bits (542), Expect = 1e-133 Identities = 627/864 (73%), Gaps = 0/864 (0%) Strand=Plus/Plus Query 34088 CCGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGG 34147 ||||| | |||| |||||| ||| ||| | | | |||||| | |||| |||| Sbjct 24708 CCGCACGCGGAGCTGCAGTACCTGGGGCAGATAGAACACATCCTCCGCTGCGGCTTCCGG 24767 Query 34148 AAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAAC 34207 |||| ||||| ||||| || || ||||| || |||||||| | ||||| || |||||| Sbjct 24768 AAGGATGACCGCACCGGCACTGGCACCCTGTCGGTGTTCGGGATGCAGGCGCGGTACAAC 24827 Query 34208 CTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 || | | |||||||| |||||||| || |||||||| | |||||| || || | ||| Sbjct 24828 CTGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTTTTGGAG 24887 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 ||| |||||||||| | | ||| |||| ||| | ||||| || || ||| ||| ||| Sbjct 24888 GAGTTGCTGTGGTTTATCAAGGGATCCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTG 24947 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 || || ||||| || ||||||| |||||||| |||| ||| ||| | | | Sbjct 24948 AAAATTTGGGATGCCAACGGGTCCCGAGACTTCTTGGATGGCTTGGGCTTCTCCAATAGA 25007 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 | || || || ||||||||||| || || ||||||||||| || |||||||| || || Sbjct 25008 GCTGAAGGGGATTTGGGCCCGGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATAC 25067 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGAC 34507 | | || | || ||||| || || |||| || || ||||| | ||||||||| Sbjct 25068 AAAGATATGGATTCAGATTATTCAGGTCAAGGAGTAGATCAACTGCAAAAAGTGATCGAC 25127 Query 34508 ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGAT 34567 || | || |||||| | ||||||| ||| | |||| || ||||| || || ||| Sbjct 25128 ACAATCAAAACCAACCCTAACAACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGAT 25187 Query 34568 CTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGG 34627 |||||||| ||||| |||||||| |||||| |||||||||| |||||||| | ||||||| Sbjct 25188 CTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAATGGG 25247 Query 34628 GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAAC 34687 ||||||||||||||| | || ||| | |||||||||||||| | || ||||| ||||| Sbjct 25248 GAGCTGTCCTGCCAGTTGTACCAAAGGTCGGGAGACATGGGCCTGGGTGTGCCCTTCAAT 25307 Query 34688 ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG 34747 ||||| || ||||| |||||||| ||||||||||| || || || || || || Sbjct 25308 ATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACACATCACGGACCTGAAGCCAGGT 25367 Query 34748 GAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGG 34807 || | || || || |||| ||||| || || |||||||| |||||||||| || | Sbjct 25368 GACTTCGTACACACTCTGGGAGATGCACACATTTACCTGAATCACATCGAGCCACTGAAG 25427 Query 34808 ATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCACC 34867 | ||||| || ||||| || | || |||||| |||||||||| || || || Sbjct 25428 ACTCAGCTTCAGCGAGAACCAAGGCCTTTCCCCAAGCTCAAAATCCTTTGAAAAGTTGAG 25487 Query 34868 TCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCCGCACTCGGCC 34927 ||||||||||||| | | || ||||| | | ||||| ||| || ||| || | Sbjct 25488 ACAATCGATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCACCCGACT 25547 Query 34928 CTGAAGATGGAGTTGGCGGTGTAG 34951 | || ||||| |||| || ||| Sbjct 25548 ATTAAAATGGAAATGGCTGTCTAG 25571 Score = 489 bits (542), Expect = 1e-133 Identities = 627/864 (73%), Gaps = 0/864 (0%) Strand=Plus/Minus Query 6394 CTACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTC 6453 ||| || |||| ||||| || | | || ||| || ||| ||||| | | ||||| Sbjct 25571 CTAGACAGCCATTTCCATTTTAATAGTCGGGTGAGGATTGTAGCCTTCAATCTGAAAGTC 25512 Query 6454 CTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACGG 6513 || | | ||||||||||||| || || || |||||||||| |||||| || Sbjct 25511 TTCAGCCTTGAAGTCATCGATTGTCTCAACTTTTCAAAGGATTTTGAGCTTGGGGAAAGG 25452 Query 6514 TCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGC 6573 | || ||||| || ||||| || || |||||||||| |||||||| || || || Sbjct 25451 CCTTGGTTCTCGCTGAAGCTGAGTCTTCAGTGGCTCGATGTGATTCAGGTAAATGTGTGC 25392 Query 6574 ATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTA 6633 ||| |||| || || || | || || || || || || || ||||||||||| Sbjct 25391 ATCTCCCAGAGTGTGTACGAAGTCACCTGGCTTCAGGTCCGTGATGTGTGCGATCATGTA 25332 Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCG 6693 |||||||| ||||| || ||||| ||||| ||||| || | |||||||||||||| | Sbjct 25331 GGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCCGACCT 25272 Query 6694 TTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCA 6753 ||| || | |||||||||||||||||||||| | |||||||| |||||||||| |||||| Sbjct 25271 TTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCA 25212 Query 6754 CGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCT 6813 |||||||| ||||| ||||||||||| || || ||||| || |||| | ||| ||||| Sbjct 25211 TGGGGGGAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCT 25152 Query 6814 GTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCC 6873 || | |||||| || | ||||||||||| | ||||| || || |||| || || Sbjct 25151 GTTGTTAGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGTTGATCTACTCCTTGACC 25092 Query 6874 CGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTA 6933 ||||| || | || | | || || |||||||| || ||||||||||| || || Sbjct 25091 TGAATAATCTGAATCCATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATA 25032 Query 6934 GACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCG 6993 ||||||||||| || || || | | | | ||| ||| |||| |||||||| Sbjct 25031 AACCGGGCCCAAATCCCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCG 24972 Query 6994 AGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGC 7053 ||||||| || ||||| || ||||| ||| ||| || || ||||| | ||| |||| Sbjct 24971 GGACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGA 24912 Query 7054 CCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGT 7113 ||| | | |||||||||| |||||| | || || |||||| | |||||||| || || Sbjct 24911 TCCCTTGATAAACCACAGCAACTCCTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGT 24852 Query 7114 CAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGT 7173 |||||| |||||||| | | |||||||| || ||||| | |||||||| || ||||| Sbjct 24851 CAGCAGAGGAAATTCATCTCTCAGGTTGTACCGCGCCTGCATCCCGAACACCGACAGGGT 24792 Query 7174 CCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCCCTCCCTGAGGATCCGCGCCACCTGATA 7233 || || ||||| ||||| |||||||| |||| | |||||| | | | ||| Sbjct 24791 GCCAGTGCCGGTGCGGTCATCCTTCCGGAAGCCGCAGCGGAGGATGTGTTCTATCTGCCC 24732 Query 7234 CAGATACTGCCACTCCCCATGCGG 7257 ||| |||||| |||| | ||||| Sbjct 24731 CAGGTACTGCAGCTCCGCGTGCGG 24708 >seq66935 Length=8519 Score = 192 bits (212), Expect = 5e-44 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || ||||| ||||| ||||| || | ||| Sbjct 2450 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCC 2509 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| ||||| || | |||||||||||||||||||||| | |||||||| ||| Sbjct 2510 ATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 2569 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| |||||||| ||||| ||||||||||| Sbjct 2570 CAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATC 2610 Score = 192 bits (212), Expect = 5e-44 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||| ||||| |||||||| |||||| |||||||||| |||||||| | |||| Sbjct 2610 GATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 2551 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||| | || ||||| |||||||||||||| | || ||||| ||| Sbjct 2550 GGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 2491 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || ||||| || ||||| |||||||| ||||||||||| || Sbjct 2490 AATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 2450 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || ||||||||||| || || || | Sbjct 4815 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCT 4874 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| |||| |||||||| ||||||| || ||||| || ||| Sbjct 4875 CTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTC 4934 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || || ||||| | ||| |||| Sbjct 4935 ACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGG 4968 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| | ||||| || || ||| ||| ||||| || ||||| || ||||||| | Sbjct 4968 CCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATTTGGGATGCCAACGGGTCCC 4909 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||| |||| ||| ||| | | | | || || || ||||||||||| | Sbjct 4908 GAGACTTCTTGGATGGCTTGGGCTTCTCCAATAGAGCTGAAGGGGATTTGGGCCCGGTTT 4849 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || |||||||| || || Sbjct 4848 ATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATA 4815 >seq34278 Length=4487281 Score = 192 bits (212), Expect = 5e-44 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || ||||| ||||| ||||| || | ||| Sbjct 3963288 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCC 3963347 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| ||||| || | |||||||||||||||||||||| | |||||||| ||| Sbjct 3963348 ATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 3963407 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| |||||||| ||||| ||||||||||| Sbjct 3963408 CAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATC 3963448 Score = 192 bits (212), Expect = 5e-44 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||| ||||| |||||||| |||||| |||||||||| |||||||| | |||| Sbjct 3963448 GATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 3963389 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||| | || ||||| |||||||||||||| | || ||||| ||| Sbjct 3963388 GGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 3963329 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || ||||| || ||||| |||||||| ||||||||||| || Sbjct 3963328 AATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 3963288 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || ||||||||||| || || || | Sbjct 3965653 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCT 3965712 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| |||| |||||||| ||||||| || ||||| || ||| Sbjct 3965713 CTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTC 3965772 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || || ||||| | ||| |||| Sbjct 3965773 ACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGG 3965806 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| | ||||| || || ||| ||| ||||| || ||||| || ||||||| | Sbjct 3965806 CCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATTTGGGATGCCAACGGGTCCC 3965747 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||| |||| ||| ||| | | | | || || || ||||||||||| | Sbjct 3965746 GAGACTTCTTGGATGGCTTGGGCTTCTCCAATAGAGCTGAAGGGGATTTGGGCCCGGTTT 3965687 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || |||||||| || || Sbjct 3965686 ATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATA 3965653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447829154390400