Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq23781 489 1e-133
seq66935 192 5e-44
seq34278 192 5e-44
>seq23781
Length=1882226
Score = 489 bits (542), Expect = 1e-133
Identities = 627/864 (73%), Gaps = 0/864 (0%)
Strand=Plus/Plus
Query 34088 CCGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGG 34147
||||| | |||| |||||| ||| ||| | | | |||||| | |||| ||||
Sbjct 24708 CCGCACGCGGAGCTGCAGTACCTGGGGCAGATAGAACACATCCTCCGCTGCGGCTTCCGG 24767
Query 34148 AAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAAC 34207
|||| ||||| ||||| || || ||||| || |||||||| | ||||| || ||||||
Sbjct 24768 AAGGATGACCGCACCGGCACTGGCACCCTGTCGGTGTTCGGGATGCAGGCGCGGTACAAC 24827
Query 34208 CTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267
|| | | |||||||| |||||||| || |||||||| | |||||| || || | |||
Sbjct 24828 CTGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTTTTGGAG 24887
Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327
||| |||||||||| | | ||| |||| ||| | ||||| || || ||| ||| |||
Sbjct 24888 GAGTTGCTGTGGTTTATCAAGGGATCCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTG 24947
Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387
|| || ||||| || ||||||| |||||||| |||| ||| ||| | | |
Sbjct 24948 AAAATTTGGGATGCCAACGGGTCCCGAGACTTCTTGGATGGCTTGGGCTTCTCCAATAGA 25007
Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447
| || || || ||||||||||| || || ||||||||||| || |||||||| || ||
Sbjct 25008 GCTGAAGGGGATTTGGGCCCGGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATAC 25067
Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGAC 34507
| | || | || ||||| || || |||| || || ||||| | |||||||||
Sbjct 25068 AAAGATATGGATTCAGATTATTCAGGTCAAGGAGTAGATCAACTGCAAAAAGTGATCGAC 25127
Query 34508 ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGAT 34567
|| | || |||||| | ||||||| ||| | |||| || ||||| || || |||
Sbjct 25128 ACAATCAAAACCAACCCTAACAACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGAT 25187
Query 34568 CTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGG 34627
|||||||| ||||| |||||||| |||||| |||||||||| |||||||| | |||||||
Sbjct 25188 CTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAATGGG 25247
Query 34628 GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAAC 34687
||||||||||||||| | || ||| | |||||||||||||| | || ||||| |||||
Sbjct 25248 GAGCTGTCCTGCCAGTTGTACCAAAGGTCGGGAGACATGGGCCTGGGTGTGCCCTTCAAT 25307
Query 34688 ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG 34747
||||| || ||||| |||||||| ||||||||||| || || || || || ||
Sbjct 25308 ATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACACATCACGGACCTGAAGCCAGGT 25367
Query 34748 GAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGG 34807
|| | || || || |||| ||||| || || |||||||| |||||||||| || |
Sbjct 25368 GACTTCGTACACACTCTGGGAGATGCACACATTTACCTGAATCACATCGAGCCACTGAAG 25427
Query 34808 ATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCACC 34867
| ||||| || ||||| || | || |||||| |||||||||| || || ||
Sbjct 25428 ACTCAGCTTCAGCGAGAACCAAGGCCTTTCCCCAAGCTCAAAATCCTTTGAAAAGTTGAG 25487
Query 34868 TCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCCGCACTCGGCC 34927
||||||||||||| | | || ||||| | | ||||| ||| || ||| || |
Sbjct 25488 ACAATCGATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCACCCGACT 25547
Query 34928 CTGAAGATGGAGTTGGCGGTGTAG 34951
| || ||||| |||| || |||
Sbjct 25548 ATTAAAATGGAAATGGCTGTCTAG 25571
Score = 489 bits (542), Expect = 1e-133
Identities = 627/864 (73%), Gaps = 0/864 (0%)
Strand=Plus/Minus
Query 6394 CTACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTC 6453
||| || |||| ||||| || | | || ||| || ||| ||||| | | |||||
Sbjct 25571 CTAGACAGCCATTTCCATTTTAATAGTCGGGTGAGGATTGTAGCCTTCAATCTGAAAGTC 25512
Query 6454 CTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACGG 6513
|| | | ||||||||||||| || || || |||||||||| |||||| ||
Sbjct 25511 TTCAGCCTTGAAGTCATCGATTGTCTCAACTTTTCAAAGGATTTTGAGCTTGGGGAAAGG 25452
Query 6514 TCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGC 6573
| || ||||| || ||||| || || |||||||||| |||||||| || || ||
Sbjct 25451 CCTTGGTTCTCGCTGAAGCTGAGTCTTCAGTGGCTCGATGTGATTCAGGTAAATGTGTGC 25392
Query 6574 ATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTA 6633
||| |||| || || || | || || || || || || || |||||||||||
Sbjct 25391 ATCTCCCAGAGTGTGTACGAAGTCACCTGGCTTCAGGTCCGTGATGTGTGCGATCATGTA 25332
Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCG 6693
|||||||| ||||| || ||||| ||||| ||||| || | |||||||||||||| |
Sbjct 25331 GGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCCGACCT 25272
Query 6694 TTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCA 6753
||| || | |||||||||||||||||||||| | |||||||| |||||||||| ||||||
Sbjct 25271 TTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCA 25212
Query 6754 CGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCT 6813
|||||||| ||||| ||||||||||| || || ||||| || |||| | ||| |||||
Sbjct 25211 TGGGGGGAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCT 25152
Query 6814 GTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCC 6873
|| | |||||| || | ||||||||||| | ||||| || || |||| || ||
Sbjct 25151 GTTGTTAGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGTTGATCTACTCCTTGACC 25092
Query 6874 CGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTA 6933
||||| || | || | | || || |||||||| || ||||||||||| || ||
Sbjct 25091 TGAATAATCTGAATCCATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATA 25032
Query 6934 GACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCG 6993
||||||||||| || || || | | | | ||| ||| |||| ||||||||
Sbjct 25031 AACCGGGCCCAAATCCCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCG 24972
Query 6994 AGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGC 7053
||||||| || ||||| || ||||| ||| ||| || || ||||| | ||| ||||
Sbjct 24971 GGACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGA 24912
Query 7054 CCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGT 7113
||| | | |||||||||| |||||| | || || |||||| | |||||||| || ||
Sbjct 24911 TCCCTTGATAAACCACAGCAACTCCTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGT 24852
Query 7114 CAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGT 7173
|||||| |||||||| | | |||||||| || ||||| | |||||||| || |||||
Sbjct 24851 CAGCAGAGGAAATTCATCTCTCAGGTTGTACCGCGCCTGCATCCCGAACACCGACAGGGT 24792
Query 7174 CCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCCCTCCCTGAGGATCCGCGCCACCTGATA 7233
|| || ||||| ||||| |||||||| |||| | |||||| | | | |||
Sbjct 24791 GCCAGTGCCGGTGCGGTCATCCTTCCGGAAGCCGCAGCGGAGGATGTGTTCTATCTGCCC 24732
Query 7234 CAGATACTGCCACTCCCCATGCGG 7257
||| |||||| |||| | |||||
Sbjct 24731 CAGGTACTGCAGCTCCGCGTGCGG 24708
>seq66935
Length=8519
Score = 192 bits (212), Expect = 5e-44
Identities = 139/161 (86%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||||| |||||||| ||||| || ||||| ||||| ||||| || | |||
Sbjct 2450 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCC 2509
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||||||||| ||||| || | |||||||||||||||||||||| | |||||||| |||
Sbjct 2510 ATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 2569
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| |||||| |||||||| ||||| |||||||||||
Sbjct 2570 CAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATC 2610
Score = 192 bits (212), Expect = 5e-44
Identities = 139/161 (86%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||||||||| ||||| |||||||| |||||| |||||||||| |||||||| | ||||
Sbjct 2610 GATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 2551
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|||||||||||||||||| | || ||||| |||||||||||||| | || ||||| |||
Sbjct 2550 GGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 2491
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
|| ||||| || ||||| |||||||| ||||||||||| ||
Sbjct 2490 AATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 2450
Score = 89.7 bits (98), Expect = 5e-13
Identities = 112/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || |||||||| || ||||||||||| || || ||||||||||| || || || |
Sbjct 4815 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCT 4874
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | | ||| ||| |||| |||||||| ||||||| || ||||| || |||
Sbjct 4875 CTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTC 4934
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052
|| ||| ||| || || ||||| | ||| ||||
Sbjct 4935 ACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGG 4968
Score = 89.7 bits (98), Expect = 5e-13
Identities = 112/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352
|||| ||| | ||||| || || ||| ||| ||||| || ||||| || ||||||| |
Sbjct 4968 CCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATTTGGGATGCCAACGGGTCCC 4909
Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412
||||||| |||| ||| ||| | | | | || || || ||||||||||| |
Sbjct 4908 GAGACTTCTTGGATGGCTTGGGCTTCTCCAATAGAGCTGAAGGGGATTTGGGCCCGGTTT 4849
Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
| || ||||||||||| || |||||||| || ||
Sbjct 4848 ATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATA 4815
>seq34278
Length=4487281
Score = 192 bits (212), Expect = 5e-44
Identities = 139/161 (86%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||||| |||||||| ||||| || ||||| ||||| ||||| || | |||
Sbjct 3963288 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCC 3963347
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||||||||| ||||| || | |||||||||||||||||||||| | |||||||| |||
Sbjct 3963348 ATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 3963407
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| |||||| |||||||| ||||| |||||||||||
Sbjct 3963408 CAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATC 3963448
Score = 192 bits (212), Expect = 5e-44
Identities = 139/161 (86%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||||||||| ||||| |||||||| |||||| |||||||||| |||||||| | ||||
Sbjct 3963448 GATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 3963389
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|||||||||||||||||| | || ||||| |||||||||||||| | || ||||| |||
Sbjct 3963388 GGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 3963329
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
|| ||||| || ||||| |||||||| ||||||||||| ||
Sbjct 3963328 AATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 3963288
Score = 89.7 bits (98), Expect = 5e-13
Identities = 112/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || |||||||| || ||||||||||| || || ||||||||||| || || || |
Sbjct 3965653 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCT 3965712
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | | ||| ||| |||| |||||||| ||||||| || ||||| || |||
Sbjct 3965713 CTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTC 3965772
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052
|| ||| ||| || || ||||| | ||| ||||
Sbjct 3965773 ACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGG 3965806
Score = 89.7 bits (98), Expect = 5e-13
Identities = 112/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352
|||| ||| | ||||| || || ||| ||| ||||| || ||||| || ||||||| |
Sbjct 3965806 CCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATTTGGGATGCCAACGGGTCCC 3965747
Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412
||||||| |||| ||| ||| | | | | || || || ||||||||||| |
Sbjct 3965746 GAGACTTCTTGGATGGCTTGGGCTTCTCCAATAGAGCTGAAGGGGATTTGGGCCCGGTTT 3965687
Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
| || ||||||||||| || |||||||| || ||
Sbjct 3965686 ATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATA 3965653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447829154390400
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