Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq70150 241 1e-58 seq55365 183 3e-41 seq23781 163 2e-35 seq40223 113 4e-20 seq29931 113 4e-20 >seq70150 Length=2088832 Score = 241 bits (266), Expect = 1e-58 Identities = 389/555 (70%), Gaps = 7/555 (1%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || |||| || | || |||||||| || || || || || ||||| Sbjct 228462 CTAAACTGCATCATCACTGTGTCCCAGAACATGGGCATCGGCAAGAACGGGAACCTGCCC 228521 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC----ATCTTCTTCCAC 2255 ||||| || || | |||||||| || |||| |||| |||||| |||| |||| Sbjct 228522 TGGCCACCACTCAGGAATGAATTCAAGTATTTCCAAAGAATGACTACAATCT-CTTCAGA 228580 Query 2256 TGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA 2315 || ||||||||| | || |||||||| || ||||| ||||| || |||| || Sbjct 228581 AGAAGCTAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCCAGAGAA 228640 Query 2316 AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACC 2375 | | ||||| | ||||||| ||| | |||||||||||| | || || || || || Sbjct 228641 GAATCGACCTTTAATGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGAACCTCC 228700 Query 2376 ACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACC 2435 | || ||||| ||| |||| |||||| | ||| | || | ||| ||| || || Sbjct 228701 AAAGGGAGCTCATTTTCTTGCCAAAAGTTTGGATGATGCCTTAGAACTTACTGAAGATCC 228760 Query 2436 AGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGA 2495 |||||||| | | | || || | | |||||||| | || || || ||||| ||| |||| Sbjct 228761 AGAATTAACAAATAAAGTAGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTATAAGGA 228820 Query 2496 GAGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 ||| ||||| | || | | | || ||| | |||||||| ||||| |||||| Sbjct 228821 AGCCATGAACAAG-CCAGGCCATCTTAGACTATTTGTGACAAGGATCATGCAAGAATTTG 228879 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || ||||| | |||||||||||| || || ||||| |||| ||| | |||| || Sbjct 228880 AAAGTGATGTGTTTTTCCCAGAAATTGATTTTGAAAAATATAAACTTCTTCCAGAATATC 228939 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 |||||||||| | | || || || ||||| || |||| ||||||| ||| |||||| Sbjct 228940 CAGGTGTTCCTTTGGATGTCCAGGAGGAAAAAGGCATTAAGTACAAATCTGAAGTATATG 228999 Query 2675 aaaaaaaaaCATAAT 2689 |||| || | |||| Sbjct 229000 AAAAGAACAATTAAT 229014 >seq55365 Length=126199 Score = 183 bits (202), Expect = 3e-41 Identities = 194/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 40807 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 40866 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | |||| |||||||| || ||||| || ||||| || || || ||| Sbjct 40867 ATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 40926 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || || |||||||| || || ||||| ||| Sbjct 40927 ATCACCCAGCTGGGACTCATGAACTCAACCATTACTTTCTGGAATACCACCTTGGAAGAT 40986 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 40987 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 41046 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 41047 TGCCTCACTCTCTTTG 41062 >seq23781 Length=1882226 Score = 163 bits (180), Expect = 2e-35 Identities = 406/608 (67%), Gaps = 9/608 (1%) Strand=Plus/Minus Query 118461 GAGT-TTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGA 118519 |||| ||||||||||| |||||||||| || | || ||||| || | || |||| || Sbjct 25431 GAGTCTTCAGTGGCTCGATGTGATTCAGGTAAATGTGTGCATCTCCCAGAGTGTGTACGA 25372 Query 118520 ATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGG 118579 | ||||| || | || | || | ||| || |||||||| || | || |||||||| Sbjct 25371 AGTCACCTGGCTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGG 25312 Query 118580 CTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGA 118639 | | ||| || || |||||||| ||||||||| | || || |||||||| ||||| || | Sbjct 25311 CAATATTGAAGGGCACACCCAGGCCCATGTCTCCCGACCTTTGGTACAACTGGCAGGACA 25252 Query 118640 GCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAAC 118699 ||||||| || | || || ||||| | | | ||| ||||| || || ||||| | Sbjct 25251 GCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAG 25192 Query 118700 TCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG--CCTTCTGCT-ATATGGTTCTACCT 118756 || | |||||||| || | | ||| |||||| | || |||| | Sbjct 25191 GGAGATCTTTTGGATTCCAAGC--ACACAGGATGATTCTTCTGTTGTTAGGGTTGGTTTT 25134 Query 118757 GTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGACTCGC 118816 | || || || | || || | ||||| || || | || | ||| | || || | Sbjct 25133 G-ATTGTGTCGATCACTTTTTGCAGTTGATCTACTCCTTGACCTGAATAATCTGAATC-C 25076 Query 118817 AT-CCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCT 118875 || |||| ||||| ||||||||| ||||| || || |||||||| || |||| ||| Sbjct 25075 ATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCC 25016 Query 118876 CCCTGGGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCATTAGCATTC 118935 || | | ||| || || | | || ||| ||||| || |||| | Sbjct 25015 CCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCC 24956 Query 118936 CAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAA 118995 ||||| ||||| || | ||| || |||| ||| || || || | | |||||| Sbjct 24955 CAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCCTTGATAAACCAC 24896 Query 118996 AGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAACTGA 119055 || | |||||| | ||| ||| |||| ||||| ||| ||||| | ||| ||||| | | Sbjct 24895 AGCAACTCCTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCA 24836 Query 119056 CCTCTAAG 119063 |||| || Sbjct 24835 TCTCTCAG 24828 >seq40223 Length=1939415 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCAAACAG 2520 |||||||| | || ||||| ||||||| |||| ||| | |||| | || | | Sbjct 1826060 TTTGGATAGTGGGAGGAAGTTCTGTCTGCAAGGAATCCATAAACAAGC-CAGGCCATCTT 1826118 Query 2521 ATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATT 2580 | || ||| | |||||||| |||| || ||||| ||||||||| || ||||||||| Sbjct 1826119 AGACTATTTGTGACAAGGATCATGCAGGAACTTGAAAGTGATACATTTTTTCCAGAAATT 1826178 Query 2581 AATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAA 2640 || | || || |||| || | |||| |||||||||||| |||| || || || Sbjct 1826179 GATTTGGAAAAGTATAAACTTCTCCCAGAATATCCAGGTGTTCCTTCTGATGTCCAGGAC 1826238 Query 2641 GAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689 ||||| || |||| ||||||||||| ||||||||| || | |||| Sbjct 1826239 GAAAAAGGCATTAAGTACAAATTTGAAGCATATGAAAAGAACAATTAAT 1826287 >seq29931 Length=376794 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||||||||| || || ||||||||| Sbjct 211247 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 211188 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 211187 TTCGGAGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 211128 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 211127 ATCGCCCTGTGGATGACCGA 211108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414086222968480