Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq33366 91.5 1e-13 seq37082 84.2 2e-11 >seq33366 Length=1752596 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || ||||| | ||| || || | || || ||||| ||||| ||||| Sbjct 780139 CTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 780080 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || | ||||||||| | ||| | || || || ||| ||| || || | | Sbjct 780079 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 780020 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || || || | |||||| |||| ||||| | || || ||||| ||||| || Sbjct 780019 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCAC 779960 Query 39273 AAAGATTTGCATCTTTAC 39290 ||||||||||| || || Sbjct 779959 GAAGATTTGCATTTTGAC 779942 >seq37082 Length=86608 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136 ||| ||| || ||| |||||| || ||||| || || | || || | | || || | Sbjct 35212 CCAGATGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCATCCTCCA 35271 Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATG 39195 ||| |||||| | || || |||||||||||||| |||||| | || ||| | ||| | Sbjct 35272 GCTCTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGG-ATGCCCTCCTCGTCTTGG 35330 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| | ||| || | | || || || | ||| || || | || || | || Sbjct 35331 ATTTTGGCTCTGACACTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTG 35390 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCC 39293 ||| |||| || || |||||||| ||||||| | |||| Sbjct 35391 CCCATCAGGGTCTTCACAAAGATCTGCATCTCTGCGCC 35428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429140823073160