Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq33366 91.5 1e-13
seq37082 84.2 2e-11
>seq33366
Length=1752596
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152
|||||| || || || ||||| | ||| || || | || || ||||| ||||| |||||
Sbjct 780139 CTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 780080
Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
|| || | ||||||||| | ||| | || || || ||| ||| || || | |
Sbjct 780079 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 780020
Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272
| | | || || || | |||||| |||| ||||| | || || ||||| ||||| ||
Sbjct 780019 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCAC 779960
Query 39273 AAAGATTTGCATCTTTAC 39290
||||||||||| || ||
Sbjct 779959 GAAGATTTGCATTTTGAC 779942
>seq37082
Length=86608
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/218 (69%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136
||| ||| || ||| |||||| || ||||| || || | || || | | || || |
Sbjct 35212 CCAGATGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCATCCTCCA 35271
Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATG 39195
||| |||||| | || || |||||||||||||| |||||| | || ||| | ||| |
Sbjct 35272 GCTCTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGG-ATGCCCTCCTCGTCTTGG 35330
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
||||| | ||| || | | || || || | ||| || || | || || | ||
Sbjct 35331 ATTTTGGCTCTGACACTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTG 35390
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCC 39293
||| |||| || || |||||||| ||||||| | ||||
Sbjct 35391 CCCATCAGGGTCTTCACAAAGATCTGCATCTCTGCGCC 35428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429140823073160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |