Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq70604 105 5e-18
seq75383 100 2e-16
seq33366 95.1 8e-15
seq25926 95.1 8e-15
seq34609 93.3 3e-14
seq61258 86.0 4e-12
>seq70604
Length=2882449
Score = 105 bits (116), Expect = 5e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| || ||||| ||||| || || |||||||| || || | ||
Sbjct 1789582 AAGATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCCAGCCC 1789523
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
|||| || | |||| |||| || || || || ||||| | || || ||
Sbjct 1789522 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 1789463
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || | | || ||||| |||| ||||||||||| | ||| ||||| || |||
Sbjct 1789462 CAGCAAAGACTGATCTTTGCTGGCAGGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 1789403
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
||||| ||||| |||||||| | ||| |||| || ||
Sbjct 1789402 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAG 1789365
>seq75383
Length=1910755
Score = 100 bits (110), Expect = 2e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || || || |||||||| || ||||| |||||||| || || || | |
Sbjct 168777 AATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCGAG 168836
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || | | || || || || |||||||| | || ||||| ||
Sbjct 168837 TGACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCA 168896
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || |||||||| ||||| |||||||| | ||||| | || |||||
Sbjct 168897 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 168956
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 168957 CATCCAGAAAGAGTCCAC 168974
>seq33366
Length=1752596
Score = 95.1 bits (104), Expect = 8e-15
Identities = 143/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|||||||| || ||||| |||||||| || || || || ||||| || || || || ||
Sbjct 779945 AAAATGCAAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 780004
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || | | || || ||||| | || || ||
Sbjct 780005 AGTGACACCATCGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAAGGCATTCCCCCTGA 780063
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| ||| | | || ||||||||||| || |||||||| | |||||| | |||||
Sbjct 780064 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 780123
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || |||||||| ||
Sbjct 780124 CAACATTCAGAAAGAGTCGAC 780144
>seq25926
Length=4460019
Score = 95.1 bits (104), Expect = 8e-15
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| || ||||| ||| | || || |||||||| || || || ||
Sbjct 2859699 AACATGCAGATTTTCGTGAAGACCCTGACGAGGAAGACCATCACTCTTGAGGTCGAGCCC 2859640
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
|||| || |||| |||| || || || || ||||| | || || ||
Sbjct 2859639 TCGGATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 2859580
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || | | || ||||| ||||| ||||||||||| | ||| ||||| || | |
Sbjct 2859579 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGC 2859520
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| ||||| ||||||||
Sbjct 2859519 AACATTCAAAAGGAGTCCAC 2859500
>seq34609
Length=2775773
Score = 93.3 bits (102), Expect = 3e-14
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||| | || ||||| || || || || |||||||| || || || ||
Sbjct 2545944 AAGATGCAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTTGAGGTCGAGCCC 2545885
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || || | |||| |||| || || || || ||||| | || || ||
Sbjct 2545884 TCAGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 2545825
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || | | || |||| ||||| ||||||||||| | ||| ||||| || |||
Sbjct 2545824 CAGCAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 2545765
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAG 23818
||||| ||||| |||||||| | ||| |||
Sbjct 2545764 AACATTCAAAAGGAGTCCACTCTTCATCTAG 2545734
>seq61258
Length=1460494
Score = 86.0 bits (94), Expect = 4e-12
Identities = 138/197 (70%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || ||||| || || || | ||| ||||| | || | || |
Sbjct 487468 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAGAGCATCTCTCTCAAGGTCAAGCCCTTG 487527
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | |||| |||| ||||| || || |||||||| || || || ||
Sbjct 487528 GATACAATAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGTGTTCCTCCTGACCAG 487587
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | | || |||| ||||||||||||||||| | | | |||| | | ||||||
Sbjct 487588 CAAAGACTGATCGTTGCTGGCAAACAACTGGAAGATGGATG-TCTTTGACCAACTACAAC 487646
Query 23791 ATACAAAAAGAGTCCAC 23807
|| ||||| ||||||||
Sbjct 487647 ATTCAAAAGGAGTCCAC 487663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337691080878560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |