Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq70604 105 5e-18 seq75383 100 2e-16 seq33366 95.1 8e-15 seq25926 95.1 8e-15 seq34609 93.3 3e-14 seq61258 86.0 4e-12 >seq70604 Length=2882449 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| || || |||||||| || || | || Sbjct 1789582 AAGATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCCAGCCC 1789523 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || || Sbjct 1789522 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 1789463 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| |||| ||||||||||| | ||| ||||| || ||| Sbjct 1789462 CAGCAAAGACTGATCTTTGCTGGCAGGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 1789403 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| |||| || || Sbjct 1789402 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAG 1789365 >seq75383 Length=1910755 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || |||||||| || ||||| |||||||| || || || | | Sbjct 168777 AATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCGAG 168836 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || || |||||||| | || ||||| || Sbjct 168837 TGACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCA 168896 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| |||||||| | ||||| | || ||||| Sbjct 168897 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 168956 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 168957 CATCCAGAAAGAGTCCAC 168974 >seq33366 Length=1752596 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| |||||||| || || || || ||||| || || || || || Sbjct 779945 AAAATGCAAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 780004 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | || || ||||| | || || || Sbjct 780005 AGTGACACCATCGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAAGGCATTCCCCCTGA 780063 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||||||||| || |||||||| | |||||| | ||||| Sbjct 780064 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 780123 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || |||||||| || Sbjct 780124 CAACATTCAGAAAGAGTCGAC 780144 >seq25926 Length=4460019 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||| | || || |||||||| || || || || Sbjct 2859699 AACATGCAGATTTTCGTGAAGACCCTGACGAGGAAGACCATCACTCTTGAGGTCGAGCCC 2859640 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || |||| |||| || || || || ||||| | || || || Sbjct 2859639 TCGGATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 2859580 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || | | Sbjct 2859579 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGC 2859520 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| |||||||| Sbjct 2859519 AACATTCAAAAGGAGTCCAC 2859500 >seq34609 Length=2775773 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | || ||||| || || || || |||||||| || || || || Sbjct 2545944 AAGATGCAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTTGAGGTCGAGCCC 2545885 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || || || || ||||| | || || || Sbjct 2545884 TCAGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 2545825 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || |||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 2545824 CAGCAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 2545765 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAG 23818 ||||| ||||| |||||||| | ||| ||| Sbjct 2545764 AACATTCAAAAGGAGTCCACTCTTCATCTAG 2545734 >seq61258 Length=1460494 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || | ||| ||||| | || | || | Sbjct 487468 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAGAGCATCTCTCTCAAGGTCAAGCCCTTG 487527 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| |||| ||||| || || |||||||| || || || || Sbjct 487528 GATACAATAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGTGTTCCTCCTGACCAG 487587 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || |||| ||||||||||||||||| | | | |||| | | |||||| Sbjct 487588 CAAAGACTGATCGTTGCTGGCAAACAACTGGAAGATGGATG-TCTTTGACCAACTACAAC 487646 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 487647 ATTCAAAAGGAGTCCAC 487663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337691080878560