Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq23781 306 3e-78
seq66935 129 5e-25
seq34278 129 5e-25
seq70150 102 7e-17
seq43829 87.8 1e-12
>seq23781
Length=1882226
Score = 306 bits (338), Expect = 3e-78
Identities = 525/770 (68%), Gaps = 0/770 (0%)
Strand=Plus/Minus
Query 29528 GGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 29587
|||||||| | |||||| || | || || || ||||| ||||| || | ||||
Sbjct 25543 GGGTGAGGATTGTAGCCTTCAATCTGAAAGTCTTCAGCCTTGAAGTCATCGATTGTCTCA 25484
Query 29588 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTC 29647
|| | | || | || |||| || || || || || | || |||||| || ||
Sbjct 25483 ACTTTTCAAAGGATTTTGAGCTTGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAGTCTTC 25424
Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707
|| || || | ||| | ||||| | ||| ||||||||||| ||||| || || || ||
Sbjct 25423 AGTGGCTCGATGTGATTCAGGTAAATGTGTGCATCTCCCAGAGTGTGTACGAAGTCACCT 25364
Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767
|| | || | |||| ||| || |||||||| ||||| || | ||||||||| || ||
Sbjct 25363 GGCTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTG 25304
Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827
|||||||| || || |||||||| || ||||| ||||| | |||||| || ||||| ||
Sbjct 25303 AAGGGCACACCCAGGCCCATGTCTCCCGACCTTTGGTACAACTGGCAGGACAGCTCCCCA 25244
Query 29828 TCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887
| |||||| ||||| || | ||| ||||| || || |||||||||||| | |||
Sbjct 25243 TTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCT 25184
Query 29888 TTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 29947
|| || ||||| ||||||| |||||| | |||| | |||||| | |||| |||
Sbjct 25183 TTTGGATTCCAAGCACACAGGATGATTCTTCTGTTGTTAGGGTTGGTTTTGATTGTGTCG 25124
Query 29948 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNN 30007
| | |||||||| ||||| || || || || || ||||
Sbjct 25123 ATCACTTTTTGCAGTTGATCTACTCCTTGACCTGAATAATCTGAATCCATATCTTTGTAT 25064
Query 30008 NNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30067
| ||||||||||||||||| || || ||||| |||| || || || | ||
Sbjct 25063 TCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCTCTA 25004
Query 30068 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30127
| ||||||| ||||| ||||||| ||| |||||||| ||||| || || ||
Sbjct 25003 TTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTCACT 24944
Query 30128 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30187
||||| || || || || | ||| ||||| || ||| |||||||||| |||||||
Sbjct 24943 CCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCCTTGATAAACCACAGCAACTCCTCC 24884
Query 30188 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCG 30247
| || | ||||| || || | ||||| || || || ||||| | | | ||| |
Sbjct 24883 AAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGTTG 24824
Query 30248 TACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTC 30297
|||| |||||| ||| |||| |||| | || ||||| || | |||
Sbjct 24823 TACCGCGCCTGCATCCCGAACACCGACAGGGTGCCAGTGCCGGTGCGGTC 24774
>seq66935
Length=8519
Score = 129 bits (142), Expect = 5e-25
Identities = 124/159 (78%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779
|||| ||| || |||||||| ||||| || | ||||||||| || || |||||||| ||
Sbjct 2444 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCC 2503
Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839
|| |||||||| || |||| ||||| | |||||| || ||||| || | ||||||
Sbjct 2504 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 2563
Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| || | ||| ||||| || || ||||||||||||
Sbjct 2564 AACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGA 2602
>seq34278
Length=4487281
Score = 129 bits (142), Expect = 5e-25
Identities = 124/159 (78%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779
|||| ||| || |||||||| ||||| || | ||||||||| || || |||||||| ||
Sbjct 3963282 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCC 3963341
Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839
|| |||||||| || |||| ||||| | |||||| || ||||| || | ||||||
Sbjct 3963342 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 3963401
Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| || | ||| ||||| || || ||||||||||||
Sbjct 3963402 AACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGA 3963440
>seq70150
Length=2088832
Score = 102 bits (112), Expect = 7e-17
Identities = 168/240 (70%), Gaps = 8/240 (3%)
Strand=Plus/Minus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || || || ||||| |||| || | ||||| |
Sbjct 228713 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCAT 228654
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 228653 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 228594
Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441
||| ||| || || ||||| | | |||| | | || | || || || || |
Sbjct 228593 CTGTTTAGCTTCTTCTGAAGAGATTGTAGTCATTCTTTGGAAATACTTGAATTCATTCCT 228534
Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 114499
||| || |||| ||||| | ||||| || |||||||||||| ||| ||||||
Sbjct 228533 GAGT------GGTGGCCAGGGCAGGTTCCCGTTCTTGCCGATGCCCATGTTCTGGGACAC 228480
>seq43829
Length=3831609
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || || || ||||| |||| || | ||||| | | ||||| |||||| || ||
Sbjct 2667316 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 2667375
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| ||||| |||||||| ||||||| ||||| ||||||
Sbjct 2667376 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2667423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405780457185520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |