Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq23781 306 3e-78 seq66935 129 5e-25 seq34278 129 5e-25 seq70150 102 7e-17 seq43829 87.8 1e-12 >seq23781 Length=1882226 Score = 306 bits (338), Expect = 3e-78 Identities = 525/770 (68%), Gaps = 0/770 (0%) Strand=Plus/Minus Query 29528 GGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 29587 |||||||| | |||||| || | || || || ||||| ||||| || | |||| Sbjct 25543 GGGTGAGGATTGTAGCCTTCAATCTGAAAGTCTTCAGCCTTGAAGTCATCGATTGTCTCA 25484 Query 29588 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTC 29647 || | | || | || |||| || || || || || | || |||||| || || Sbjct 25483 ACTTTTCAAAGGATTTTGAGCTTGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAGTCTTC 25424 Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 || || || | ||| | ||||| | ||| ||||||||||| ||||| || || || || Sbjct 25423 AGTGGCTCGATGTGATTCAGGTAAATGTGTGCATCTCCCAGAGTGTGTACGAAGTCACCT 25364 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | || | |||| ||| || |||||||| ||||| || | ||||||||| || || Sbjct 25363 GGCTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTG 25304 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 |||||||| || || |||||||| || ||||| ||||| | |||||| || ||||| || Sbjct 25303 AAGGGCACACCCAGGCCCATGTCTCCCGACCTTTGGTACAACTGGCAGGACAGCTCCCCA 25244 Query 29828 TCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887 | |||||| ||||| || | ||| ||||| || || |||||||||||| | ||| Sbjct 25243 TTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCT 25184 Query 29888 TTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 29947 || || ||||| ||||||| |||||| | |||| | |||||| | |||| ||| Sbjct 25183 TTTGGATTCCAAGCACACAGGATGATTCTTCTGTTGTTAGGGTTGGTTTTGATTGTGTCG 25124 Query 29948 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNN 30007 | | |||||||| ||||| || || || || || |||| Sbjct 25123 ATCACTTTTTGCAGTTGATCTACTCCTTGACCTGAATAATCTGAATCCATATCTTTGTAT 25064 Query 30008 NNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30067 | ||||||||||||||||| || || ||||| |||| || || || | || Sbjct 25063 TCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCTCTA 25004 Query 30068 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30127 | ||||||| ||||| ||||||| ||| |||||||| ||||| || || || Sbjct 25003 TTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTCACT 24944 Query 30128 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30187 ||||| || || || || | ||| ||||| || ||| |||||||||| ||||||| Sbjct 24943 CCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCCTTGATAAACCACAGCAACTCCTCC 24884 Query 30188 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCG 30247 | || | ||||| || || | ||||| || || || ||||| | | | ||| | Sbjct 24883 AAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGTTG 24824 Query 30248 TACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTC 30297 |||| |||||| ||| |||| |||| | || ||||| || | ||| Sbjct 24823 TACCGCGCCTGCATCCCGAACACCGACAGGGTGCCAGTGCCGGTGCGGTC 24774 >seq66935 Length=8519 Score = 129 bits (142), Expect = 5e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779 |||| ||| || |||||||| ||||| || | ||||||||| || || |||||||| || Sbjct 2444 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCC 2503 Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839 || |||||||| || |||| ||||| | |||||| || ||||| || | |||||| Sbjct 2504 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 2563 Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| || | ||| ||||| || || |||||||||||| Sbjct 2564 AACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGA 2602 >seq34278 Length=4487281 Score = 129 bits (142), Expect = 5e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779 |||| ||| || |||||||| ||||| || | ||||||||| || || |||||||| || Sbjct 3963282 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCC 3963341 Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839 || |||||||| || |||| ||||| | |||||| || ||||| || | |||||| Sbjct 3963342 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 3963401 Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| || | ||| ||||| || || |||||||||||| Sbjct 3963402 AACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGA 3963440 >seq70150 Length=2088832 Score = 102 bits (112), Expect = 7e-17 Identities = 168/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | ||||| | Sbjct 228713 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCAT 228654 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 228653 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 228594 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441 ||| ||| || || ||||| | | |||| | | || | || || || || | Sbjct 228593 CTGTTTAGCTTCTTCTGAAGAGATTGTAGTCATTCTTTGGAAATACTTGAATTCATTCCT 228534 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 114499 ||| || |||| ||||| | ||||| || |||||||||||| ||| |||||| Sbjct 228533 GAGT------GGTGGCCAGGGCAGGTTCCCGTTCTTGCCGATGCCCATGTTCTGGGACAC 228480 >seq43829 Length=3831609 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 2667316 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 2667375 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 2667376 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2667423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405780457185520