Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq65209 129 5e-25 seq6493 113 4e-20 seq29163 107 2e-18 seq26065 86.0 5e-12 seq23055 86.0 5e-12 >seq65209 Length=3338390 Score = 129 bits (142), Expect = 5e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31768 GCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCC 31827 ||| || ||||| || ||||| || | | ||||| |||||||| ||| || | ||||| Sbjct 2239788 GCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGCTCC 2239729 Query 31828 TAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGA 31887 | | ||||| ||||||| |||||||| || || || || || ||||| |||||| ||| Sbjct 2239728 TCGTTCTGGCTTGGCAGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGA 2239669 Query 31888 CTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||||||||| ||||| |||| ||||||||||||| Sbjct 2239668 TTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTTGG 2239630 >seq6493 Length=163338 Score = 113 bits (124), Expect = 4e-20 Identities = 208/302 (69%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || ||||| || ||||| || | | ||||| |||||||| ||| || || Sbjct 143360 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGCGGC 143301 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| | ||| | |||||| |||||||| || || || | || ||||| |||||| Sbjct 143300 TCCTCGTTCTAGCTTGGCAACAAAACACTTCATAGATGTAGAAGCTGGTGTCATAGATGA 143241 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||| ||| ||||| |||| ||||||||||||| ||| || | | || Sbjct 143240 AGATTATAGAGTAAATGTTGGTGTTGTCCTGTTTAATTTTGGCAAAGAGAAGT-TTGAAG 143182 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAAT 32001 | |||||||| ||| | | || || || ||||| ||| ||| || |||| Sbjct 143181 --TCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAATGGATATTTTACCCAGAAAT 143124 Query 32002 AGAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGG 32061 ||| | || | | | ||||| ||| |||| || | ||||||||| || || || Sbjct 143123 AGAGGAAGTTCAAATTTTAGATGACACTGAAAGGGGTTCAGGAGGCTTTGGTTCCACTGG 143064 Query 32062 AA 32063 || Sbjct 143063 AA 143062 >seq29163 Length=2664742 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 301515 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 301456 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||||| ||||| || || |||||||| |||||||| || || ||||| ||| Sbjct 301455 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 301396 Query 4692 AC 4693 || Sbjct 301395 AC 301394 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 299831 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 299772 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | ||| || || | |||||||| Sbjct 299771 ATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTC 299728 >seq26065 Length=1373002 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/131 (75%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 |||||||| || || ||||| || || || || ||||||||||||||||| || || Sbjct 1012547 CAAAATCTC---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAG 1012491 Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039 | ||||| ||||| |||| || || | || || || |||||||| || | ||| || Sbjct 1012490 ATGTGAGAGATAAAATACTTCTCTTCCGATTTGAGCTTGTTCCAGTGAGGAAGATCCTTT 1012431 Query 5040 GTTAAATCAAC 5050 | ||||||||| Sbjct 1012430 GATAAATCAAC 1012420 >seq23055 Length=1432527 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 |||||| | || || || || | ||||| |||||| | || | ||| ||| ||| Sbjct 16650 AAAACCAACATCCAGATAGCTCTTCCTTCTGGGTGCCATGGGACAGTAGTTCCACATTCT 16709 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 || |||| | |||||||| | | |||| || |||||||||||| ||| |||||| Sbjct 16710 GGTTTGGTTGCGAAACACTTCAGGGTTGTGGCAGCTGGTGTTATAGATGAAGATTATAGA 16769 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 |||| | |||| ||||||| | ||||||||| Sbjct 16770 GGAAGCATTGGTGTTGTGTTATGTAATTTTGG 16801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426647175147560