Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq65209 129 5e-25
seq6493 113 4e-20
seq29163 107 2e-18
seq26065 86.0 5e-12
seq23055 86.0 5e-12
>seq65209
Length=3338390
Score = 129 bits (142), Expect = 5e-25
Identities = 124/159 (78%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 31768 GCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCC 31827
||| || ||||| || ||||| || | | ||||| |||||||| ||| || | |||||
Sbjct 2239788 GCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGCTCC 2239729
Query 31828 TAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGA 31887
| | ||||| ||||||| |||||||| || || || || || ||||| |||||| |||
Sbjct 2239728 TCGTTCTGGCTTGGCAGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGA 2239669
Query 31888 CTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926
||||||||||| ||||| |||| |||||||||||||
Sbjct 2239668 TTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTTGG 2239630
>seq6493
Length=163338
Score = 113 bits (124), Expect = 4e-20
Identities = 208/302 (69%), Gaps = 6/302 (2%)
Strand=Plus/Minus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
|| ||| || ||||| || ||||| || | | ||||| |||||||| ||| || ||
Sbjct 143360 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGCGGC 143301
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
|||| | ||| | |||||| |||||||| || || || | || ||||| ||||||
Sbjct 143300 TCCTCGTTCTAGCTTGGCAACAAAACACTTCATAGATGTAGAAGCTGGTGTCATAGATGA 143241
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941
||| ||||||| ||| ||||| |||| ||||||||||||| ||| || | | ||
Sbjct 143240 AGATTATAGAGTAAATGTTGGTGTTGTCCTGTTTAATTTTGGCAAAGAGAAGT-TTGAAG 143182
Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAAT 32001
| |||||||| ||| | | || || || ||||| ||| ||| || ||||
Sbjct 143181 --TCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAATGGATATTTTACCCAGAAAT 143124
Query 32002 AGAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGG 32061
||| | || | | | ||||| ||| |||| || | ||||||||| || || ||
Sbjct 143123 AGAGGAAGTTCAAATTTTAGATGACACTGAAAGGGGTTCAGGAGGCTTTGGTTCCACTGG 143064
Query 32062 AA 32063
||
Sbjct 143063 AA 143062
>seq29163
Length=2664742
Score = 107 bits (118), Expect = 2e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|||||||||||||| ||||| || |||||||| | || ||||| | |||| || ||
Sbjct 301515 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 301456
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||||| ||||| || || |||||||| |||||||| || || ||||| |||
Sbjct 301455 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 301396
Query 4692 AC 4693
||
Sbjct 301395 AC 301394
Score = 89.7 bits (98), Expect = 4e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| |||||||| || || || |||||||||||||||||||| ||||| || |||
Sbjct 299831 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 299772
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
|| || || || || || || | ||| || || | ||||||||
Sbjct 299771 ATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTC 299728
>seq26065
Length=1373002
Score = 86.0 bits (94), Expect = 5e-12
Identities = 98/131 (75%), Gaps = 3/131 (2%)
Strand=Plus/Minus
Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979
|||||||| || || ||||| || || || || ||||||||||||||||| || ||
Sbjct 1012547 CAAAATCTC---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAG 1012491
Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039
| ||||| ||||| |||| || || | || || || |||||||| || | ||| ||
Sbjct 1012490 ATGTGAGAGATAAAATACTTCTCTTCCGATTTGAGCTTGTTCCAGTGAGGAAGATCCTTT 1012431
Query 5040 GTTAAATCAAC 5050
| |||||||||
Sbjct 1012430 GATAAATCAAC 1012420
>seq23055
Length=1432527
Score = 86.0 bits (94), Expect = 5e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834
|||||| | || || || || | ||||| |||||| | || | ||| ||| |||
Sbjct 16650 AAAACCAACATCCAGATAGCTCTTCCTTCTGGGTGCCATGGGACAGTAGTTCCACATTCT 16709
Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894
|| |||| | |||||||| | | |||| || |||||||||||| ||| ||||||
Sbjct 16710 GGTTTGGTTGCGAAACACTTCAGGGTTGTGGCAGCTGGTGTTATAGATGAAGATTATAGA 16769
Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926
|||| | |||| ||||||| | |||||||||
Sbjct 16770 GGAAGCATTGGTGTTGTGTTATGTAATTTTGG 16801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426647175147560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |