Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq23781 331 7e-86 seq66935 82.4 6e-11 seq34278 82.4 6e-11 >seq23781 Length=1882226 Score = 331 bits (366), Expect = 7e-86 Identities = 486/688 (71%), Gaps = 0/688 (0%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 |||| || || || || || | || |||||||||||||| || || | ||||| ||||| Sbjct 25461 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAGTCTTCAGTGGCTCGATGTGATTCAGGT 25402 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | ||| || |||||||| ||||| || || || || || | || | |||| ||| | Sbjct 25401 AAATGTGTGCATCTCCCAGAGTGTGTACGAAGTCACCTGGCTTCAGGTCCGTGATGTGTG 25342 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||||||| ||||| || | ||||||||| || || ||||| || || || ||||||| Sbjct 25341 CGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGT 25282 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 | |||||||| ||||| | ||| || || ||||| |||| ||||| ||||| || | Sbjct 25281 CTCCCGACCTTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGA 25222 Query 27344 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 27403 ||||||||| || || || |||||||| | ||||| || ||||| || |||| || Sbjct 25221 GGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGA 25162 Query 27404 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 27463 |||| | |||| | |||||| | |||| ||| | | |||||||| ||||| | Sbjct 25161 TGATTCTTCTGTTGTTAGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGTTGATCTA 25102 Query 27464 CCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATT 27523 | || || || || ||| ||| || |||| || || || ||||||||||| | Sbjct 25101 CTCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCAGCCCCAAAATGCCTCCACT 25042 Query 27524 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 27583 |||| || || ||||| |||| || || || | || | ||||||| |||| Sbjct 25041 GGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCA 24982 Query 27584 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 27643 | ||||||| ||| |||||||| ||||| || || || ||||| || || || || | Sbjct 24981 AGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAG 24922 Query 27644 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 27703 ||| ||||| || ||| |||||||||| |||||||| || | ||||| || || | Sbjct 24921 CGTTGGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCTTTCCAGAAAACAC 24862 Query 27704 TCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACA 27763 ||||| || || || ||||| | | | ||| ||||| ||||| || |||| Sbjct 24861 GTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGTTGTACCGCGCCTGCATCCCGAACA 24802 Query 27764 CGGACAAGACTCCCGTGCCCGTCCTGTC 27791 | |||| | || ||||| || | ||| Sbjct 24801 CCGACAGGGTGCCAGTGCCGGTGCGGTC 24774 >seq66935 Length=8519 Score = 82.4 bits (90), Expect = 6e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || || ||||||||||| ||||| || || ||||| |||| || Sbjct 4805 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATC 4864 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || | || | ||||||| ||||| ||||||| ||| |||||||| || Sbjct 4865 CCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 4924 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||| || || || ||||| || || || || | ||| ||||| || Sbjct 4925 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 4972 >seq34278 Length=4487281 Score = 82.4 bits (90), Expect = 6e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || || ||||||||||| ||||| || || ||||| |||| || Sbjct 3965643 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATC 3965702 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || | || | ||||||| ||||| ||||||| ||| |||||||| || Sbjct 3965703 CCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 3965762 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||| || || || ||||| || || || || | ||| ||||| || Sbjct 3965763 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 3965810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369158999508920