Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq74126 129 2e-25 seq40494 95.1 4e-15 >seq74126 Length=69924 Score = 129 bits (142), Expect = 2e-25 Identities = 393/593 (66%), Gaps = 27/593 (5%) Strand=Plus/Minus Query 14595 CGGCGGCGCATGCCATAGCGCCAGGCCCGATCGCGGTTTGTGACACC-GACAGCCGTGAT 14653 |||||||||||||| ||||||||| || ||| | | || || | || || ||| Sbjct 31691 CGGCGGCGCATGCCGATGCGCCAGGCGCGGGTGCGATCGGCGATGCCCGGCA-CCTTGAC 31633 Query 14654 CTTCTCGACCTTCCTGCCGACATCGCCGGGCAGGCGGCACTGCACGGTATCTTCGAT--C 14711 |||||||||||| |||| | || || ||| |||||| | ||||| || | || | Sbjct 31632 CTTCTCGACCTTGTTGCCAAGGTCACCCGGCCAGCGGCATTCGACGGTTTC--CCATGCC 31575 Query 14712 CAGCCGTTGGCGTTGACGAAATCCACGTCAACACCGTCGTAGTCGTC-CTCAGACGGAGC 14770 ||| | | | | ||| | | || || ||||||||||| | ||||| ||| ||| | Sbjct 31574 CAGGTGATCGAGCTGAAGTACTCGACATCAACACCGTCAAAATCGTCGCTCGATGGGAAC 31515 Query 14771 GCTGATGCTGATCCTCAGTGGACCATC--CATGTTCTGCGGCGAGTACATGTGCCCGAAT 14828 | | || | | | || | | |||||||||||||| |||||||||| |||| Sbjct 31514 ACCAGT--TGG-CGTTTGAGGCCTTTGGTCATGTTCTGCGGCGTGTACATGTGCTCGAAC 31458 Query 14829 GTTGTCCTTGGCTCGTCTCGGGCCG-CAGAGATCACGCCGCGCTTGATGGTCTTCTCGGC 14887 || | |||||||| || ||| ||| | || ||||| ||||||||| || | Sbjct 31457 TGCGTGCGCGGCTCGTCGCGCACCGGCAGC-AGCAGCCCGCGGTTGATGGTCAGTTCTGA 31399 Query 14888 ATACCCGGCCGCAAGAACATCGTCCATAATCTGGGCGACGGTGATCTTGCCGTCCTCGTA 14947 ||||||| || || | |||| ||| ||| | ||| | | | | | || | Sbjct 31398 GAACCCGGCGGCCAGCGCGTCGTTCATC------GCGTCTTTGACCGTACTGGCGTCATC 31345 Query 14948 GATC---ATGTCGAACGTGTCGCCGCGGGCCT--TCCAGATTGCGTCCAGCCGATCCAGT 15002 ||| ||||| || ||||||||||| || | || || | | || || ||||| Sbjct 31344 AATCGTCATGTCAAAGGTGTCGCCGCGTGCGCGGTACACAT--CATGAAGTCGGTCCAGC 31287 Query 15003 TCGTCGAGGTCGAGATCCGCATCGGTGTAGCCGCGCTCCTTCGCGATGTAGCAGAGGAAC 15062 ||| | || || ||||| ||||||||||||||| | ||| ||||||||| || || Sbjct 31286 TCGACCAGATCCAGATCGGCATCGGTGTAGCCGGCCGACTTTGCGATGTAGAGGAACCAC 31227 Query 15063 GGGACGATGTCTCGCGTAGCGATCTCGCTCGTCCATGCTCCACCCTGGCGGGTTGGGAGC 15122 || ||||| || ||||| | |||| | ||| || || ||| ||| || || Sbjct 31226 GGCACGATATCCCGCGTCGGTGTCTCCACTGCCCAGGCACCGCCCGAGCGCACCGGCAGT 31167 Query 15123 ATGCGAGTGGCCTCTACCGAAACGCGGCTTTCGGTCTGCGCCGCGATGCGGTC 15175 | || || ||||| || || ||||||| | ||||||| || ||||| Sbjct 31166 ACACGTGTTGCCTCGACACTGACCAGGCTTTCAGATTGCGCCGAGAGCCGGTC 31114 Score = 82.4 bits (90), Expect = 2e-11 Identities = 158/227 (70%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 17485 CACGTTGTCGATTGCGAA-TCCAACGTTCTGGTTTCCGCTGTTGTCTCG-CTTCGGAATC 17542 |||||||||||| ||||| | | ||| |||| | |||||||| ||| |||||| | | Sbjct 28117 CACGTTGTCGATGGCGAAGTTGAGCGT-CTGGCTCGCGCTGTTG-CTCTTCTTCGGTAGC 28060 Query 17543 GATACGTCGATAGCGCCGGCAATGAACGTCAGCAGCCGCCCGTCTTCGGTCATGCAGGTG 17602 ||||||||||| | ||||||| | ||| || ||||| |||| |||||| Sbjct 28059 GATACGTCGATGCCAGCGGCAATTAGTTGCAGGCTGCGGCCGTCCTCGGCGGTGCAGGCC 28000 Query 17603 ATGTCGTCATAGCCCTGGCAGATGAGGATAGGCTCCGGCCACGCCGGGCATGACAACTCG 17662 | || ||| |||| ||||| | || |||| ||| |||||||| | |||||| Sbjct 27999 ACATCTTCAAAGCCGCCACAGATCGACACCGGTTCCGTCCAGGCCGGGCACGTCAACTCT 27940 Query 17663 ACCGTGGCGAGCTTCAGGTCTTCACCGCCGGAGGCATAGAAGCGCTC 17709 | ||| ||| ||| | ||||| || |||||||| | ||||| Sbjct 27939 AGGGTGTCGATGATCA---CGTCACCACCCGAGGCATACACACGCTC 27896 >seq40494 Length=1808469 Score = 95.1 bits (104), Expect = 4e-15 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 11876 ACGCCGGCTCGATGGCCGGCGTTCGGGAGGATTTGCAGCAGTTGCTGCTCAGTGATAGGC 11935 |||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||| Sbjct 1216082 ACGCCGGCAACTTGGCCGGCGTTCGGGAGGATCTGCAGCAGTTGCTGCGTGGTGATGGGC 1216023 Query 11936 ATTCT-GATCTCCAGGCACAAAAAAGCCCGCAGAGTGCGGGCTG 11978 ||||| |||||||| | | ||| |||||| || ||||| || Sbjct 1216022 ATTCTCAATCTCCAGATAGGAGAAAACCCGCACAGGGCGGGTTG 1215979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160316665966800