Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_030909.1
Length=50183
Score E
Sequences producing significant alignments: (Bits) Value
seq74126 129 2e-25
seq40494 95.1 4e-15
>seq74126
Length=69924
Score = 129 bits (142), Expect = 2e-25
Identities = 393/593 (66%), Gaps = 27/593 (5%)
Strand=Plus/Minus
Query 14595 CGGCGGCGCATGCCATAGCGCCAGGCCCGATCGCGGTTTGTGACACC-GACAGCCGTGAT 14653
|||||||||||||| ||||||||| || ||| | | || || | || || |||
Sbjct 31691 CGGCGGCGCATGCCGATGCGCCAGGCGCGGGTGCGATCGGCGATGCCCGGCA-CCTTGAC 31633
Query 14654 CTTCTCGACCTTCCTGCCGACATCGCCGGGCAGGCGGCACTGCACGGTATCTTCGAT--C 14711
|||||||||||| |||| | || || ||| |||||| | ||||| || | || |
Sbjct 31632 CTTCTCGACCTTGTTGCCAAGGTCACCCGGCCAGCGGCATTCGACGGTTTC--CCATGCC 31575
Query 14712 CAGCCGTTGGCGTTGACGAAATCCACGTCAACACCGTCGTAGTCGTC-CTCAGACGGAGC 14770
||| | | | | ||| | | || || ||||||||||| | ||||| ||| ||| |
Sbjct 31574 CAGGTGATCGAGCTGAAGTACTCGACATCAACACCGTCAAAATCGTCGCTCGATGGGAAC 31515
Query 14771 GCTGATGCTGATCCTCAGTGGACCATC--CATGTTCTGCGGCGAGTACATGTGCCCGAAT 14828
| | || | | | || | | |||||||||||||| |||||||||| ||||
Sbjct 31514 ACCAGT--TGG-CGTTTGAGGCCTTTGGTCATGTTCTGCGGCGTGTACATGTGCTCGAAC 31458
Query 14829 GTTGTCCTTGGCTCGTCTCGGGCCG-CAGAGATCACGCCGCGCTTGATGGTCTTCTCGGC 14887
|| | |||||||| || ||| ||| | || ||||| ||||||||| || |
Sbjct 31457 TGCGTGCGCGGCTCGTCGCGCACCGGCAGC-AGCAGCCCGCGGTTGATGGTCAGTTCTGA 31399
Query 14888 ATACCCGGCCGCAAGAACATCGTCCATAATCTGGGCGACGGTGATCTTGCCGTCCTCGTA 14947
||||||| || || | |||| ||| ||| | ||| | | | | | || |
Sbjct 31398 GAACCCGGCGGCCAGCGCGTCGTTCATC------GCGTCTTTGACCGTACTGGCGTCATC 31345
Query 14948 GATC---ATGTCGAACGTGTCGCCGCGGGCCT--TCCAGATTGCGTCCAGCCGATCCAGT 15002
||| ||||| || ||||||||||| || | || || | | || || |||||
Sbjct 31344 AATCGTCATGTCAAAGGTGTCGCCGCGTGCGCGGTACACAT--CATGAAGTCGGTCCAGC 31287
Query 15003 TCGTCGAGGTCGAGATCCGCATCGGTGTAGCCGCGCTCCTTCGCGATGTAGCAGAGGAAC 15062
||| | || || ||||| ||||||||||||||| | ||| ||||||||| || ||
Sbjct 31286 TCGACCAGATCCAGATCGGCATCGGTGTAGCCGGCCGACTTTGCGATGTAGAGGAACCAC 31227
Query 15063 GGGACGATGTCTCGCGTAGCGATCTCGCTCGTCCATGCTCCACCCTGGCGGGTTGGGAGC 15122
|| ||||| || ||||| | |||| | ||| || || ||| ||| || ||
Sbjct 31226 GGCACGATATCCCGCGTCGGTGTCTCCACTGCCCAGGCACCGCCCGAGCGCACCGGCAGT 31167
Query 15123 ATGCGAGTGGCCTCTACCGAAACGCGGCTTTCGGTCTGCGCCGCGATGCGGTC 15175
| || || ||||| || || ||||||| | ||||||| || |||||
Sbjct 31166 ACACGTGTTGCCTCGACACTGACCAGGCTTTCAGATTGCGCCGAGAGCCGGTC 31114
Score = 82.4 bits (90), Expect = 2e-11
Identities = 158/227 (70%), Gaps = 7/227 (3%)
Strand=Plus/Minus
Query 17485 CACGTTGTCGATTGCGAA-TCCAACGTTCTGGTTTCCGCTGTTGTCTCG-CTTCGGAATC 17542
|||||||||||| ||||| | | ||| |||| | |||||||| ||| |||||| | |
Sbjct 28117 CACGTTGTCGATGGCGAAGTTGAGCGT-CTGGCTCGCGCTGTTG-CTCTTCTTCGGTAGC 28060
Query 17543 GATACGTCGATAGCGCCGGCAATGAACGTCAGCAGCCGCCCGTCTTCGGTCATGCAGGTG 17602
||||||||||| | ||||||| | ||| || ||||| |||| ||||||
Sbjct 28059 GATACGTCGATGCCAGCGGCAATTAGTTGCAGGCTGCGGCCGTCCTCGGCGGTGCAGGCC 28000
Query 17603 ATGTCGTCATAGCCCTGGCAGATGAGGATAGGCTCCGGCCACGCCGGGCATGACAACTCG 17662
| || ||| |||| ||||| | || |||| ||| |||||||| | ||||||
Sbjct 27999 ACATCTTCAAAGCCGCCACAGATCGACACCGGTTCCGTCCAGGCCGGGCACGTCAACTCT 27940
Query 17663 ACCGTGGCGAGCTTCAGGTCTTCACCGCCGGAGGCATAGAAGCGCTC 17709
| ||| ||| ||| | ||||| || |||||||| | |||||
Sbjct 27939 AGGGTGTCGATGATCA---CGTCACCACCCGAGGCATACACACGCTC 27896
>seq40494
Length=1808469
Score = 95.1 bits (104), Expect = 4e-15
Identities = 84/104 (81%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 11876 ACGCCGGCTCGATGGCCGGCGTTCGGGAGGATTTGCAGCAGTTGCTGCTCAGTGATAGGC 11935
|||||||| |||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct 1216082 ACGCCGGCAACTTGGCCGGCGTTCGGGAGGATCTGCAGCAGTTGCTGCGTGGTGATGGGC 1216023
Query 11936 ATTCT-GATCTCCAGGCACAAAAAAGCCCGCAGAGTGCGGGCTG 11978
||||| |||||||| | | ||| |||||| || ||||| ||
Sbjct 1216022 ATTCTCAATCTCCAGATAGGAGAAAACCCGCACAGGGCGGGTTG 1215979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160316665966800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |