Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq74126 145 2e-30 seq23535 131 5e-26 >seq74126 Length=69924 Score = 145 bits (160), Expect = 2e-30 Identities = 397/590 (67%), Gaps = 21/590 (4%) Strand=Plus/Plus Query 24460 GACCGTATCGCGGCGCAGACAGAAAGCCGCGTCTCGGTAGAGGCTACCCGCATGCTACCG 24519 ||||| || ||||||| | ||||||| ||| || ||||| || || | || ||| Sbjct 31114 GACCGGCTCTCGGCGCAATCTGAAAGCCTGGTCAGTGTCGAGGCAACACGTGTACTGCCG 31173 Query 24520 ACTCGGCAGAACGGTGCATGGACACCCGAGATAGCAACGCGAGACATCGTCCCATTCCTC 24579 || | |||||| ||| || |||| | | ||||| || ||||| || | || Sbjct 31174 GTGCGCTCGGGCGGTGCCTGGGCAGTGGAGACACCGACGCGGGATATCGTGCCGTGGTTC 31233 Query 24580 TGCTACATCGCGAAGGAACGCGGCTACACCGATGCGGATCTCGATCTTGAGGAACTCGAT 24639 ||||||||| ||| ||||||||||||||| ||||| ||||| | || || || Sbjct 31234 CTCTACATCGCAAAGTCGGCCGGCTACACCGATGCCGATCTGGATCTGGTCGAGCTGGAC 31293 Query 24640 CGGCTGGACGCAATCTGGA--AGGCCCGCGGCGACACGTTTGACATGATCTACGAGGACG 24697 || || | | || || | || ||||||||||| |||||||||| || |||| Sbjct 31294 CGACTTCATG--ATGTGTACCGCGCACGCGGCGACACCTTTGACATGACGATTGATGACG 31351 Query 24698 GCAAGGTCACGGTCGCGCAGGTCATGGACGATGTGCTTGCCGCCGGGTATGCGGAGAAGA 24757 || || |||||| | | ||| |||| | ||| |||||||||| | || || Sbjct 31352 CCA--GT-ACGGTCAAAGACGCGATGAACGACGCGCTGGCCGCCGGGTTCTCAGAACTGA 31408 Query 24758 CCATTAAGCGCGGCGTGAT-CTCCGCAGCCCGAGACGAACCAAGGACCACATTCGGGCAC 24816 |||| || ||||| || | || | | | || ||||| || | || |||| |||| Sbjct 31409 CCATCAACCGCGGGCTGCTGCTGC-CGGTGCGCGACGAGCCGCGCACGCAGTTCGAGCAC 31467 Query 24817 ATGTACTCGCCGCAGAACATG--GATGGTCCGCTGAGGATCAGCATCAGCGCGCCGTCTG 24874 |||||| |||||||||||||| | | || | | | || | | | || || | Sbjct 31468 ATGTACACGCCGCAGAACATGACCAAAGGCCTCAAACG-CCAACTGGTGTTC-CCATC-G 31524 Query 24875 AG-GACGACTACGACGGCGTCGATGTAGAGTTCGTCAATGCCAACGGCTGG--ATCGAAG 24931 || ||||| | ||||| || ||||| |||| | ||| | | | |||| || | | Sbjct 31525 AGCGACGATTTTGACGGTGTTGATGTCGAGTACTTCAGCTCGATCACCTGGGCATGG--G 31582 Query 24932 ATACCGTCCAGTGCCGACTGCCCGGCGATGTTGGCAGGAAGGTCGAGAAGATCACGGCTG 24991 | |||||| | ||||| ||| || || |||||| |||||||||||| ||| || || Sbjct 31583 AAACCGTCGAATGCCGCTGGCCGGGTGACCTTGGCAACAAGGTCGAGAAGGTCAAGG-TG 31641 Query 24992 TC-GGTGTCACAAACCGCGATCGCGCCTGGCGCTACGGGATGCGCCGCCG 25040 | || || | | ||| |||||||||||| ||| ||||||||||| Sbjct 31642 CCGGGCATCGCCGATCGCACCCGCGCCTGGCGCATCGGCATGCGCCGCCG 31691 >seq23535 Length=854 Score = 131 bits (144), Expect = 5e-26 Identities = 278/412 (67%), Gaps = 5/412 (1%) Strand=Plus/Plus Query 8092 GGTGGACGAGGCAGTGCCAAAACGCGCACGTTCGCCAAGATGACGGCAGTAAGGGCGTAC 8151 ||||| || || |||||| || || | || || ||||| || | | || || Sbjct 163 GGTGGTCGTGGATCTGCCAAGACTCGATCATTTGCACTTATGACTGCTATCAAGGGTTAT 222 Query 8152 ATGTACGCGGAGGCTGGAATCAGTGGCGTGATCCTCGGGGCGCGCGAGTACATGAACTCG 8211 || | || |||||| ||||||||| |||||||||| ||||| || | ||||||| || Sbjct 223 ATCTTTGCAGAGGCTCAAATCAGTGGAATGATCCTCGGTGCGCGTGAATTCATGAACACG 282 Query 8212 CTTGAAGAGTCCTCCATGGAGGAAATCAAGCAGGCAATTCGATCCGAGCCATGGCTGGAC 8271 ||| || || || ||||| |||||||||||||| || | ||| |||| ||| | Sbjct 283 CTTTCTGAATCTTCAATGGAAGAAATCAAGCAGGCGATACAGTCCACACCATTTCTGAAT 342 Query 8272 GCGTACTTTGACATTGGTGAGAAGTACATTCGGACCAAGAATCGCCGAATTTCGTATGTG 8331 || | ||| |||||||| | || || || ||||| || || | |||| | Sbjct 343 AATTATTATGATATTGGTGAAAGTTATATACGTACCAAAAACAAAAGAGTCAGTTATG-G 401 Query 8332 TTCTGC-GGATTGCGCCATAACCTCGACAGCATCAAGTCGAAGGCCAGAATCCTGATCGC 8390 | ||| || | || |||||||| ||||||| || || || || | || || | Sbjct 402 CTTTGCTGGTCTACGGCATAACCTAAACAGCATTAAATCTAAAGCGCGTATTTTGCTTTG 461 Query 8391 CTGGGTTGACGAGGCTGAAAACGTCAGCGAAACGGCGTGGATAAAGCTCCTGCCGACGGT 8450 ||||||||| ||||||||| | || || || ||| || | || || || || Sbjct 462 CTGGGTTGATGAGGCTGAAGATGTTTCAGAGCTTGCTTGGCGTAAATTACTACCCACTGT 521 Query 8451 TCGTGAGAACGACTCGGAGGTCTGGATTACCTGGAACCCGGA---GCGCGAT 8499 ||||| | |||| ||||| |||||||| ||||| || || ||||||| Sbjct 522 GCGTGAAGATAACTCAGAGGTTTGGATTACATGGAATCCTGAAAGGCGCGAT 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156640044850800