Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq66703 226 3e-54 >seq66703 Length=1304 Score = 226 bits (250), Expect = 3e-54 Identities = 449/653 (69%), Gaps = 18/653 (3%) Strand=Plus/Minus Query 142087 GTAACCCATGTCTCAACATCTTCCAGAGACTTGATGTTAGGGTTAATAATTAGTTGAGGC 142146 || ||||||||||||| |||||| |||||||| || | ||||||||| |||| ||| Sbjct 901 GTTACCCATGTCTCAATATCTTCGAGAGACTTAATTTCAGGGTTAATGTGAAGTTTAGGG 842 Query 142147 TCGTCAAAGGGCTCACGGGAGATCTGTGTCGGCACCATAGGTAATTGGTCTTCATAGATA 142206 | | | || || || | || || || | ||||||| |||||||| ||| Sbjct 841 GCTGGATACGGTTCGCGTTNCAC--GTCACG-CATTAATTGTAATTGATCTTCATAAATA 785 Query 142207 TGTGCGTTCACAATCTTAT-AGAACATTTTACCTGGCTTGTTCCGGGTGATTTGAGCCAT 142265 ||||| || || ||||||| | || |||| || | || || | || ||||||||||| Sbjct 784 TGTGCATTTACGATCTTATGATAAGCTTTT-CCGGCCTCGTGGCCCGTAATTTGAGCCAT 726 Query 142266 CAGATGCAGGAATGTATACGCCTGGATTAAATCAAAGTTCAATCCTAATGGAACATCCGC 142325 ||| || || ||| || | || || || ||| || |||||||| ||||| Sbjct 725 GAGAGCTAGTAAGGTAAACACTTGAATCTGATTAAAATTTTGACCTAATGGTACATCACA 666 Query 142326 CGAACGTTG--ATAAACGGTCACATGCAAAGTAT--CATGTACTAAAGAAAAAGTATATG 142381 |||||||| || || |||| || |||| | || || || ||||| |||| | Sbjct 665 TGAACGTTGTGATGAA--GTCAAAT--AAAGCTTGCCACCTAACAACGAAAATGTATGAG 610 Query 142382 TGTGTACGCATGAACGTAAACATCCTAATTCAATTTCACCAGGGTTCCAGTAAGAAAGAA 142441 | || | || | |||||||||||| | | || ||||| || || || | | |||| Sbjct 609 TATGCATACAAGGACGTAAACATCCCATATGAAACTCACCTGGATTGTAGAAGGTTAGAA 550 Query 142442 TTTCACCACGATCGTCGATACCCGCTGACAGGTTTTCATAGATTTTACGAAGTTGATCGA 142501 ||||||| || || || ||||| | || ||| |||||||| ||| |||| || || | Sbjct 549 TTTCACCTCGGTCATCAATACCGTTTCGCAAGTTATCATAGATCTTATGAAGCTGGTCAA 490 Query 142502 ---CTTCACCATTAGGACCAACCCAATGTCTGCCCTGTACACCATAAACCCGGCCCATAT 142558 | || || | | | ||| | ||||||||||||||||| |||||||||| Sbjct 489 ACTCCTCTCCTACTGAATTACGCCACCTGCGCCCCTGTACACCATAAACTCGGCCCATAT 430 Query 142559 CGTCTTCACCTTTACGATTTGGGTTTTTTAACCATGCTTCATTCTCATTGGCATTAGCAT 142618 | || | ||||||||||| || || |||||| |||||||| |||||||||||||| | Sbjct 429 CATCCTTACCTTTACGATAAGGATTAGCTAACCAAGCTTCATTTTCATTGGCATTAGCGT 370 Query 142619 TCCAAGTATTTGTACCAAGTGCCCGGAAATCTGCTGCAGACGACA-GACCACGAATATAA 142677 |||| ||||| |||| || || || | ||||| | || |||||| | ||| Sbjct 369 TCCATGTATTACATCCAATAGCTCGAAACTGAGCTGC-GCTATCATAACCACGTAGATAC 311 Query 142678 CCCAGCAGTTCGGCAATGGATGCTTTATAAAAACTTTTACGAGTGGTGTCTAA 142730 || | | ||| || || | |||||| || |||| || ||||| || |||| Sbjct 310 CCTAATAATTCTGCGATAGCTGCTTTCCAATAACTCTTTCGAGTAGTTACTAA 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521610575659200