Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq36501 132 7e-26
seq65209 122 1e-22
seq6493 114 2e-20
seq29163 91.5 2e-13
seq23055 86.0 9e-12
>seq36501
Length=2370580
Score = 132 bits (146), Expect = 7e-26
Identities = 109/133 (82%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | ||
Sbjct 2290866 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 2290807
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| |||||||| || |||||||| |||||||| ||||| || || | | ||||||
Sbjct 2290806 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 2290747
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 2290746 TTTCTTATACCAT 2290734
Score = 113 bits (124), Expect = 6e-20
Identities = 130/175 (74%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798
|| |||| |||| ||| || ||||| ||||| | ||||| || || || ||||| || |
Sbjct 2267074 CACCACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCA 2267015
Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858
| || ||||||||||| || | ||||| | || || ||| | || || || ||| |||
Sbjct 2267014 GGATGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTAT 2266955
Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913
| | || | ||| ||||||||| | |||| ||||| || |||||||||| |||
Sbjct 2266954 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGGTGAT 2266900
Score = 102 bits (112), Expect = 1e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| || |||||||| || |||
Sbjct 2271334 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 2271275
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|| ||||||||||| | || || || || ||||| || || | ||| | |||||||
Sbjct 2271274 TAGGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 2271215
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
|| || || ||||||||| ||
Sbjct 2271214 ATGTGTTGTGGTCTTTCAGCC 2271194
>seq65209
Length=3338390
Score = 122 bits (134), Expect = 1e-22
Identities = 246/360 (68%), Gaps = 15/360 (4%)
Strand=Plus/Plus
Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935
||||||||| ||||| ||| | | |||||||| |||||| | ||| |||||||
Sbjct 2239494 TCCAGTGGAACCAAAGCCTCCGGAACCCCTTTCAGTGTCATCTAAAATTTGAACTTCCTC 2239553
Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995
| || || ||| |||| |||| | | || || | || ||| ||||||| | || |
Sbjct 2239554 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGCAGTTCGATCACCCTTTTTGAC 2239613
Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055
|||||| | ||||| ||| ||| | ||| | || |||| | ||||||||||||||
Sbjct 2239614 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 2239673
Query 46056 ATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGAGC 46112
|||||| || || |||| ||||| || |||| | || ||||| | ||||||
Sbjct 2239674 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGC 2239733
Query 46113 TATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATC 46168
| ||||||||| ||||| || | | ||| |||| || ||||| | ||| |
Sbjct 2239734 CACTCTTCCATAGCACCCAGAA----GGAAGGGCTATCTGAATGTCAGTTTTCA-CAAGC 2239788
Query 46169 TCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCTGC 46226
|| ||||||| || || | || || || || |||||||| | || || || || ||
Sbjct 2239789 ACC-TTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCGGC 2239847
>seq6493
Length=163338
Score = 114 bits (126), Expect = 2e-20
Identities = 245/359 (68%), Gaps = 19/359 (5%)
Strand=Plus/Plus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| ||||||
Sbjct 143063 TCCAGTGGAACCAAAGCCTCCTGAAC--CCCTTTCAGTGTCATCTAAAATTTGAACTTCC 143120
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | || || ||| |||| | || | | || || || || |||| ||||||| | ||
Sbjct 143121 TCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 143180
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| ||| ||| | ||| | || |||| | |||||||||||
Sbjct 143181 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTACTCTATAATCT 143240
Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110
|||||||| || || || | ||||| || |||| | || | ||| | ||||
Sbjct 143241 TCATCTATGACACCAGCTTCTACATCTATGAAGTGTTTTGTTGCCAAGCTAGAACGAGGA 143300
Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166
|| ||||||||| ||||| || | | ||| |||| || ||||| | |||
Sbjct 143301 GCCGCTCTTCCATAGCACCCAGAA----GGAAGGGCTATCTGAATGTCAGTTTTCA-CAA 143355
Query 46167 TCTCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGC 46223
| ||||||||| || || | || || || || |||||||| | ||||| || ||
Sbjct 143356 GC-ACTTTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCATAGCCCGC 143413
>seq29163
Length=2664742
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
||||| ||||||||| | ||||| || || || | ||||| || || ||||| || ||
Sbjct 303116 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 303057
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929
|||| ||| |||||||||||||| |||||||||||
Sbjct 303056 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATT 303022
>seq23055
Length=1432527
Score = 86.0 bits (94), Expect = 9e-12
Identities = 140/202 (69%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935
||||||||| ||||| ||| | || |||||||| ||||| | ||| || ||||
Sbjct 16937 TCCAGTGGAACCAAAACCTCCTGAATCCCTTTCAGTGTTATCTAAAACTTGAACATCCTC 16878
Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995
| ||||||||| |||| || | | || || || | || ||||||| | || |
Sbjct 16877 TATTTCAGGATAAAATATCTATTCACAAATGAGCTGCTCAGTTTGATCACCCTTTTTGAC 16818
Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055
|||||| | ||||| ||| ||| | | || ||||| | ||||||||||||||
Sbjct 16817 TTCAAACCTTTCTTTGCCAAAATTACATAACACAACACCAATGCTTCCTCTATAATCTTC 16758
Query 46056 ATCTATTACTCCCCCTCCCACA 46077
|||||| || || || |||||
Sbjct 16757 ATCTATAACACCAGCTGCCACA 16736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693997402604800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |