Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq36501 132 7e-26 seq65209 122 1e-22 seq6493 114 2e-20 seq29163 91.5 2e-13 seq23055 86.0 9e-12 >seq36501 Length=2370580 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 2290866 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 2290807 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 2290806 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 2290747 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 2290746 TTTCTTATACCAT 2290734 Score = 113 bits (124), Expect = 6e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| |||| ||| || ||||| ||||| | ||||| || || || ||||| || | Sbjct 2267074 CACCACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCA 2267015 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | || ||||||||||| || | ||||| | || || ||| | || || || ||| ||| Sbjct 2267014 GGATGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTAT 2266955 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 | | || | ||| ||||||||| | |||| ||||| || |||||||||| ||| Sbjct 2266954 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGGTGAT 2266900 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 2271334 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 2271275 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 2271274 TAGGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 2271215 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || ||||||||| || Sbjct 2271214 ATGTGTTGTGGTCTTTCAGCC 2271194 >seq65209 Length=3338390 Score = 122 bits (134), Expect = 1e-22 Identities = 246/360 (68%), Gaps = 15/360 (4%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||| ||||| ||| | | |||||||| |||||| | ||| ||||||| Sbjct 2239494 TCCAGTGGAACCAAAGCCTCCGGAACCCCTTTCAGTGTCATCTAAAATTTGAACTTCCTC 2239553 Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995 | || || ||| |||| |||| | | || || | || ||| ||||||| | || | Sbjct 2239554 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGCAGTTCGATCACCCTTTTTGAC 2239613 Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055 |||||| | ||||| ||| ||| | ||| | || |||| | |||||||||||||| Sbjct 2239614 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 2239673 Query 46056 ATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGAGC 46112 |||||| || || |||| ||||| || |||| | || ||||| | |||||| Sbjct 2239674 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGC 2239733 Query 46113 TATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATC 46168 | ||||||||| ||||| || | | ||| |||| || ||||| | ||| | Sbjct 2239734 CACTCTTCCATAGCACCCAGAA----GGAAGGGCTATCTGAATGTCAGTTTTCA-CAAGC 2239788 Query 46169 TCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCTGC 46226 || ||||||| || || | || || || || |||||||| | || || || || || Sbjct 2239789 ACC-TTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCGGC 2239847 >seq6493 Length=163338 Score = 114 bits (126), Expect = 2e-20 Identities = 245/359 (68%), Gaps = 19/359 (5%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| |||||| Sbjct 143063 TCCAGTGGAACCAAAGCCTCCTGAAC--CCCTTTCAGTGTCATCTAAAATTTGAACTTCC 143120 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| | || | | || || || || |||| ||||||| | || Sbjct 143121 TCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 143180 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| | ||||||||||| Sbjct 143181 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTACTCTATAATCT 143240 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || || | ||||| || |||| | || | ||| | |||| Sbjct 143241 TCATCTATGACACCAGCTTCTACATCTATGAAGTGTTTTGTTGCCAAGCTAGAACGAGGA 143300 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 || ||||||||| ||||| || | | ||| |||| || ||||| | ||| Sbjct 143301 GCCGCTCTTCCATAGCACCCAGAA----GGAAGGGCTATCTGAATGTCAGTTTTCA-CAA 143355 Query 46167 TCTCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGC 46223 | ||||||||| || || | || || || || |||||||| | ||||| || || Sbjct 143356 GC-ACTTTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCATAGCCCGC 143413 >seq29163 Length=2664742 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| ||||||||| | ||||| || || || | ||||| || || ||||| || || Sbjct 303116 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 303057 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| ||| |||||||||||||| ||||||||||| Sbjct 303056 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATT 303022 >seq23055 Length=1432527 Score = 86.0 bits (94), Expect = 9e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||| ||||| ||| | || |||||||| ||||| | ||| || |||| Sbjct 16937 TCCAGTGGAACCAAAACCTCCTGAATCCCTTTCAGTGTTATCTAAAACTTGAACATCCTC 16878 Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995 | ||||||||| |||| || | | || || || | || ||||||| | || | Sbjct 16877 TATTTCAGGATAAAATATCTATTCACAAATGAGCTGCTCAGTTTGATCACCCTTTTTGAC 16818 Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055 |||||| | ||||| ||| ||| | | || ||||| | |||||||||||||| Sbjct 16817 TTCAAACCTTTCTTTGCCAAAATTACATAACACAACACCAATGCTTCCTCTATAATCTTC 16758 Query 46056 ATCTATTACTCCCCCTCCCACA 46077 |||||| || || || ||||| Sbjct 16757 ATCTATAACACCAGCTGCCACA 16736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693997402604800