Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq36501 136 6e-27 seq26065 107 3e-18 seq29163 89.7 7e-13 seq65209 87.8 3e-12 >seq36501 Length=2370580 Score = 136 bits (150), Expect = 6e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 2290866 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 2290807 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| |||||||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 2290806 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 2290747 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 2290746 TTTCTTATACCAT 2290734 >seq26065 Length=1373002 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | || || ||||| ||||| |||||||| ||||| | || | Sbjct 1017728 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 1017669 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 1017668 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1017609 Query 46772 CGAC 46775 | || Sbjct 1017608 CCAC 1017605 >seq29163 Length=2664742 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340 ||| |||||| |||| || | ||| ||| ||| | |||||| ||||||||| | Sbjct 303159 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATTCT 303100 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || || ||||| | ||||| || || ||||| || || |||| ||| |||||||| Sbjct 303099 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 303040 Query 46401 CATAAAATCAAACGGATT 46418 |||||| ||||| ||||| Sbjct 303039 CATAAAGTCAAATGGATT 303022 >seq65209 Length=3338390 Score = 87.8 bits (96), Expect = 3e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 44402 ATCTAGAGATTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGC 44461 ||||| | ||| |||||||||| || || ||| |||| |||| | | || || | || Sbjct 2239533 ATCTAAAATTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGC 2239592 Query 44462 TATTCTATCACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCC 44521 ||| |||||| | || | || ||| | ||||| ||| ||| | || | || || Sbjct 2239593 AGTTCGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACC 2239652 Query 44522 AATGTTCCCCCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT 44569 || || || ||||||||||||||||| || ||| |||| ||||| || Sbjct 2239653 AACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTAT 2239700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712245348902400