Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq36501 136 6e-27
seq26065 107 3e-18
seq29163 89.7 7e-13
seq65209 87.8 3e-12
>seq36501
Length=2370580
Score = 136 bits (150), Expect = 6e-27
Identities = 110/133 (83%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | ||
Sbjct 2290866 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 2290807
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| |||||||| || ||||||||||||||||| ||||| || || | | ||||||
Sbjct 2290806 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 2290747
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 2290746 TTTCTTATACCAT 2290734
>seq26065
Length=1373002
Score = 107 bits (118), Expect = 3e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | || || ||||| ||||| |||||||| ||||| | || |
Sbjct 1017728 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 1017669
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || |
Sbjct 1017668 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1017609
Query 46772 CGAC 46775
| ||
Sbjct 1017608 CCAC 1017605
>seq29163
Length=2664742
Score = 89.7 bits (98), Expect = 7e-13
Identities = 103/138 (75%), Gaps = 3/138 (2%)
Strand=Plus/Minus
Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340
||| |||||| |||| || | ||| ||| ||| | |||||| ||||||||| |
Sbjct 303159 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATTCT 303100
Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400
|| || || ||||| | ||||| || || ||||| || || |||| ||| ||||||||
Sbjct 303099 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 303040
Query 46401 CATAAAATCAAACGGATT 46418
|||||| ||||| |||||
Sbjct 303039 CATAAAGTCAAATGGATT 303022
>seq65209
Length=3338390
Score = 87.8 bits (96), Expect = 3e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 44402 ATCTAGAGATTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGC 44461
||||| | ||| |||||||||| || || ||| |||| |||| | | || || | ||
Sbjct 2239533 ATCTAAAATTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGC 2239592
Query 44462 TATTCTATCACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCC 44521
||| |||||| | || | || ||| | ||||| ||| ||| | || | || ||
Sbjct 2239593 AGTTCGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACC 2239652
Query 44522 AATGTTCCCCCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT 44569
|| || || ||||||||||||||||| || ||| |||| ||||| ||
Sbjct 2239653 AACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTAT 2239700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712245348902400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |