Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq48527 95.1 3e-15 seq15303 80.6 7e-11 >seq48527 Length=2014000 Score = 95.1 bits (104), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 35585 TTCAGGCCATCTTCCCGAACGAAAACCCGCAGTTGGGCCGTGACCGTGACTACCTGCCAG 35644 ||||||||||||| || || ||||| | | ||||||| || || | | |||| | Sbjct 1957250 TTCAGGCCATCTTTCCCGACAAAAACAACCCGATGGGCCGCGATAAGGATTTCATGCCTG 1957191 Query 35645 GCGGCCAGAAGCGTGGATGC-TTCCACGTCATCGGCAACAAGCCAACCG-GGCAGAAACC 35702 |||||| ||||| || ||| ||| || ||||||||| ||| ||| || |||||| Sbjct 1957190 GCGGCCGAAAGCGCGG-TGCGTTCTACATCATCGGCACGCCGCCGGCCGAGGGCGAAACC 1957132 Query 35703 CGTCATTGTGGTCTGTGAGGGCTACGCCACTGGTGCATCCATTCACCAGGCTACCGGGTT 35762 || || ||| |||||||||||||| | || | || ||| | || ||| | | Sbjct 1957131 ----ATCGTCGTCGCCGAGGGCTACGCCACCGCCGCCACGATCCACGACGCGACCCGCTG 1957076 Query 35763 CTGTGTGGCCGTGGCATTCGATGACGGCAACCTG 35796 || || |||||||| ||||| | |||||||||| Sbjct 1957075 GTGCGTTGCCGTGGCGTTCGACGCCGGCAACCTG 1957042 >seq15303 Length=32000 Score = 80.6 bits (88), Expect = 7e-11 Identities = 122/171 (71%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 14880 GCTAATGGTGCGGCAGTCAGCCGAACCGCTTACGCTGACCTGTTCGCAGCGATCGGCACC 14939 || |||||||| || ||| || || | ||||| | |||||||| |||||||||| Sbjct 11906 GCCAATGGTGCAGCGGTCTCGCGCACGGTCTACGCGGCCCTGTTCGGCAAGATCGGCACC 11847 Query 14940 ACGTTTGGAGCAGGGGATGGGCTTACCACTTTTAACCTGCCAGATCTACGCGGTGAATTT 14999 || | || || |||||||| ||| ||| || || ||||| || | || || ||||| Sbjct 11846 ACCTACGGTGCCGGGGATGGCGTTAGCACCTTCAATCTGCCTGACCCTCGGGGCAAATTT 11787 Query 15000 GTTCGCTACCTGG-ATGACGGCAGAGGCGTTGACTCAGGCCGCGCGCTTGG 15049 || || || |||| ||||||||| ||| | || || || | |||||| Sbjct 11786 GTCCG-TATCTGGGATGACGGCAAGGGCATCGATATCGGTCGGGTGCTTGG 11737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133892949859200