Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq2574 114 9e-21 >seq2574 Length=648000 Score = 114 bits (126), Expect = 9e-21 Identities = 181/256 (71%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 62401 GATGCCAATATTCTTTCGACTACCTCCCCTCAAAGCCATATCACGTACGTTAATCCTGAC 62460 || || ||||| || || || ||| | | |||| |||||| || | || |||||| Sbjct 310217 GACGCTAATATCCTCTCCACCACCGATCTCGACAGCCGTATCACCTATGCCAACCCTGAC 310276 Query 62461 TTCATTAAAATCAGTGGTT-TCA-CTGAGGAAGAACTATTAGGCCAGCCTCACAACATCG 62518 |||||| | |||| |||| | | ||||| || || || ||| || ||||| | Sbjct 310277 TTCATTCAGGTCAGCGGTTATGAGCTGAGTGAG--CTGTTGGGCAGCCCCCACAATCTGC 310334 Query 62519 TAAGACACCCAGATATGCCGCCTGCTGCATTTGAGCATATGTGGAGTACATTAAAATCTG 62578 || | ||||| || ||||| | || || || ||||||||| || | || | | Sbjct 310335 TACGCCACCCCGACATGCCTGCCGCGGCCTTCAGCCATATGTGGCAGACGCTCAAGGCCG 310394 Query 62579 GCCGCTCATGGATGGGGCTAGTAAAAAATCGCTGTAAAAATGGCGACCACTATTGGGTAA 62638 | ||||| ||||||||| | || ||||| ||||| || ||||||||||| |||||||| | Sbjct 310395 GACGCTCCTGGATGGGGATGGTGAAAAACCGCTGCAAGAATGGCGACCATTATTGGGTTA 310454 Query 62639 GTGCTTATGTAACGCC 62654 |||| || || ||||| Sbjct 310455 GTGCCTACGTCACGCC 310470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330587381275120