Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq75383 154 3e-32
seq70604 120 7e-22
seq33366 120 7e-22
seq34609 116 9e-21
seq25926 105 2e-17
seq64865 102 2e-16
seq42836 98.7 2e-15
seq61258 91.5 3e-13
seq69229 87.8 4e-12
>seq75383
Length=1910755
Score = 154 bits (170), Expect = 3e-32
Identities = 170/225 (76%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | |||||| || || ||||| |||||||| ||||||||||| || | | ||
Sbjct 168998 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 168939
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| ||||||||| || ||||||||| ||||| | |||||||||||| | | ||| |||
Sbjct 168938 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCT 168879
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
|| |||||||| || || |||||| |||| | | |||| ||| ||| || ||
Sbjct 168878 TCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTC---ACTCGGCTCCACCTCC 168822
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
||||| || ||||| || ||||| ||||| || |||| |||||||
Sbjct 168821 AGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 168777
Score = 140 bits (154), Expect = 7e-28
Identities = 166/224 (74%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | |||||| || || ||||| ||||| || ||||||||||| || | | ||
Sbjct 169226 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 169167
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| ||||||||| || ||||||||| ||||| |||||||||||||| | | ||| ||
Sbjct 169166 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 169107
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
|| || ||||| || || ||||| |||| | | |||| ||| ||| || ||
Sbjct 169106 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 169050
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || |||||||| | ||||||||||||| ||||||
Sbjct 169049 AGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169006
Score = 140 bits (154), Expect = 7e-28
Identities = 166/224 (74%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | |||||| || || ||||| ||||| || ||||||||||| || | | ||
Sbjct 169454 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 169395
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| ||||||||| || ||||||||| ||||| |||||||||||||| | | ||| ||
Sbjct 169394 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 169335
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
|| || ||||| || || ||||| |||| | | |||| ||| ||| || ||
Sbjct 169334 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 169278
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || |||||||| | ||||||||||||| ||||||
Sbjct 169277 AGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169234
Score = 140 bits (154), Expect = 7e-28
Identities = 166/224 (74%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | |||||| || || ||||| ||||| || ||||||||||| || | | ||
Sbjct 169682 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 169623
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| ||||||||| || ||||||||| ||||| |||||||||||||| | | ||| ||
Sbjct 169622 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 169563
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
|| || ||||| || || ||||| |||| | | |||| ||| ||| || ||
Sbjct 169562 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 169506
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || |||||||| | ||||||||||||| ||||||
Sbjct 169505 AGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169462
Score = 140 bits (154), Expect = 7e-28
Identities = 166/224 (74%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | |||||| || || ||||| ||||| || ||||||||||| || | | ||
Sbjct 169910 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 169851
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| ||||||||| || ||||||||| ||||| |||||||||||||| | | ||| ||
Sbjct 169850 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 169791
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
|| || ||||| || || ||||| |||| | | |||| ||| ||| || ||
Sbjct 169790 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 169734
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || |||||||| | ||||||||||||| ||||||
Sbjct 169733 AGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169690
Score = 132 bits (146), Expect = 1e-25
Identities = 159/215 (74%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || ||||| ||||| || ||||||||||| || | | || | |||||||
Sbjct 170129 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 170070
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||||||||| ||||| |||||||||||||| | | ||| || || || |||
Sbjct 170069 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 170010
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || ||||| |||| | | |||| ||| ||| || || || || ||
Sbjct 170009 TGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 169953
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| | ||||||||||||| ||||||
Sbjct 169952 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169918
>seq70604
Length=2882449
Score = 120 bits (132), Expect = 7e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | || ||||||||||| ||||| ||||| |||||||| || | ||||| |
Sbjct 1789362 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 1789421
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || | || || ||||| || || |||||||| | | |||||||||
Sbjct 1789422 CCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 1789481
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || || ||| | |||| | || || || || ||||||||
Sbjct 1789482 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGACCTCAAGAGTG 1789541
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || ||||| || ||||||||||| | |||||| ||
Sbjct 1789542 ATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 1789582
>seq33366
Length=1752596
Score = 120 bits (132), Expect = 7e-22
Identities = 158/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || |||||||| || ||||||||||| | | ||| | ||||||
Sbjct 780159 AGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 780100
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||| ||||| |||||||||||||| | | || |||||||| ||
Sbjct 780099 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 780040
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || ||| |||| | | |||| ||| ||| || || || || ||
Sbjct 780039 TGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 779983
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| || || || |||||||||| ||||||||
Sbjct 779982 GTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTT 779945
>seq34609
Length=2775773
Score = 116 bits (128), Expect = 9e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958
||||||||||| ||||| ||||| |||||||| || | ||||| | |||||||| ||
Sbjct 2545736 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGT 2545795
Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018
|| || | ||||| || || |||||||| | | ||||||||||| || || ||
Sbjct 2545796 TGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATC 2545855
Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078
|| || ||| | |||| | ||||| ||| || |||||||| || || || ||
Sbjct 2545856 TTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTCCCT 2545915
Query 152079 GTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || ||||||| ||| | |||||| ||
Sbjct 2545916 GTCAGGGTCTTCATGAAAATCTGCATCTT 2545944
>seq25926
Length=4460019
Score = 105 bits (116), Expect = 2e-17
Identities = 156/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | || ||| |||||| ||||| ||||| |||||| | || | ||||| |
Sbjct 2859479 AGTCTCAACACTAGACAAAGAGTGGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGT 2859538
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || || || || ||||| || || |||||||| | | |||||||||
Sbjct 2859539 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 2859598
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || || ||| | ||| | || || ||| || ||||||||
Sbjct 2859599 TTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTG 2859658
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || | ||| || ||||||||||| | |||||| ||
Sbjct 2859659 ATGGTCTTCCTCGTCAGGGTCTTCACGAAAATCTGCATGTT 2859699
>seq64865
Length=1526523
Score = 102 bits (112), Expect = 2e-16
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | | |||||||||||| ||||| ||||| |||||||| || | ||||| |
Sbjct 730079 AGTCTCAACAAAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 730138
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
||||||| || || || || ||||| || || |||||||| | | |||||||
Sbjct 730139 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCC 730198
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| | || | || || ||| | |||| | ||||| ||| || ||| ||||
Sbjct 730199 TTACCCTGGACCTTGACCTTTACATTTTCTATGGGATCTGAGGGCTCGACCTCAGGAGTC 730258
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || ||| | || ||||||||||| | |||||| ||
Sbjct 730259 ATGGTCTTCCCCATCAGGGTCTTCACGAAAATCTGCATCTT 730299
>seq42836
Length=1893264
Score = 98.7 bits (108), Expect = 2e-15
Identities = 158/224 (71%), Gaps = 5/224 (2%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | || | ||||||||| ||||| ||||| |||||||| || | ||||| |
Sbjct 1011602 AGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 1011543
Query 151947 CCATCTTCTAGGCTT--TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004
|||||||| | ||| ||||| || ||||| || || |||||||| | | |||||||
Sbjct 1011542 CCATCTTCCA--CTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTT 1011485
Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064
|||| || || || || | ||| |||| | || || ||| || | ||||
Sbjct 1011484 CCTTATCCTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGACCTTGAGAG 1011425
Query 152065 TAATAGTTTTGCCCGT-GAGAGTCTTCACGAAGACCTGCATTTT 152107
| || || || || || ||||||||||| || | |||||| ||
Sbjct 1011424 TGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 1011381
>seq61258
Length=1460494
Score = 91.5 bits (100), Expect = 3e-13
Identities = 151/217 (70%), Gaps = 1/217 (0%)
Strand=Plus/Minus
Query 151888 GTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCC 151947
|||| || |||||||||||||| ||||| ||||| |||||||| | || |||| | |
Sbjct 487683 GTCTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGTCAAAG-ACATC 487625
Query 151948 CATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCT 152007
||||||| || ||| || || | ||| || || |||||||| | | | |||||||
Sbjct 487624 CATCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCCT 487565
Query 152008 TTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAA 152067
| || || ||||| || ||| | |||| | || | || || | |||| |
Sbjct 487564 TATCCTGGATTTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAGAGA 487505
Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| | || || || || ||||||||||| | ||||||
Sbjct 487504 TGCTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 487468
>seq69229
Length=1436921
Score = 87.8 bits (96), Expect = 4e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | |||||| ||||||| | ||| ||||| |||||||| || | ||||| |
Sbjct 420450 AGTCTCAACACAAGAGGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 420509
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || || || || ||||| || || || ||||| | |||||||||
Sbjct 420510 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCCTTCC 420569
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || || || | ||| | || || || || ||||||||
Sbjct 420570 TTATCCTGGATCTTGGCCTTTGCATTTACTATTGTATCCGAGGGCTTGACCTCAAGAGTG 420629
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || | || || ||||||| ||| | |||||| ||
Sbjct 420630 ATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 420670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1152677753001720
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