Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq75383 154 3e-32 seq70604 120 7e-22 seq33366 120 7e-22 seq34609 116 9e-21 seq25926 105 2e-17 seq64865 102 2e-16 seq42836 98.7 2e-15 seq61258 91.5 3e-13 seq69229 87.8 4e-12 >seq75383 Length=1910755 Score = 154 bits (170), Expect = 3e-32 Identities = 170/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| |||||||| ||||||||||| || | | || Sbjct 168998 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 168939 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| | |||||||||||| | | ||| ||| Sbjct 168938 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCT 168879 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || |||||||| || || |||||| |||| | | |||| ||| ||| || || Sbjct 168878 TCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTC---ACTCGGCTCCACCTCC 168822 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || ||||| || ||||| ||||| || |||| ||||||| Sbjct 168821 AGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 168777 Score = 140 bits (154), Expect = 7e-28 Identities = 166/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 169226 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 169167 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| |||||||||||||| | | ||| || Sbjct 169166 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 169107 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 169106 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 169050 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| | ||||||||||||| |||||| Sbjct 169049 AGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169006 Score = 140 bits (154), Expect = 7e-28 Identities = 166/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 169454 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 169395 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| |||||||||||||| | | ||| || Sbjct 169394 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 169335 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 169334 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 169278 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| | ||||||||||||| |||||| Sbjct 169277 AGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169234 Score = 140 bits (154), Expect = 7e-28 Identities = 166/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 169682 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 169623 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| |||||||||||||| | | ||| || Sbjct 169622 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 169563 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 169562 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 169506 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| | ||||||||||||| |||||| Sbjct 169505 AGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169462 Score = 140 bits (154), Expect = 7e-28 Identities = 166/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 169910 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 169851 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| |||||||||||||| | | ||| || Sbjct 169850 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 169791 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 169790 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 169734 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| | ||||||||||||| |||||| Sbjct 169733 AGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169690 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| ||||| || ||||||||||| || | | || | ||||||| Sbjct 170129 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 170070 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||||||| ||||| |||||||||||||| | | ||| || || || ||| Sbjct 170069 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 170010 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| ||| ||| || || || || || Sbjct 170009 TGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 169953 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| | ||||||||||||| |||||| Sbjct 169952 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169918 >seq70604 Length=2882449 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 1789362 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 1789421 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || | || || ||||| || || |||||||| | | ||||||||| Sbjct 1789422 CCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 1789481 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| | || || || || |||||||| Sbjct 1789482 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGACCTCAAGAGTG 1789541 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || ||||||||||| | |||||| || Sbjct 1789542 ATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 1789582 >seq33366 Length=1752596 Score = 120 bits (132), Expect = 7e-22 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| || ||||||||||| | | ||| | |||||| Sbjct 780159 AGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 780100 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||| | | || |||||||| || Sbjct 780099 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 780040 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || || || || || Sbjct 780039 TGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 779983 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || || |||||||||| |||||||| Sbjct 779982 GTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTT 779945 >seq34609 Length=2775773 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 ||||||||||| ||||| ||||| |||||||| || | ||||| | |||||||| || Sbjct 2545736 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGT 2545795 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 || || | ||||| || || |||||||| | | ||||||||||| || || || Sbjct 2545796 TGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATC 2545855 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || || ||| | |||| | ||||| ||| || |||||||| || || || || Sbjct 2545856 TTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTCCCT 2545915 Query 152079 GTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||||| ||| | |||||| || Sbjct 2545916 GTCAGGGTCTTCATGAAAATCTGCATCTT 2545944 >seq25926 Length=4460019 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||| |||||| ||||| ||||| |||||| | || | ||||| | Sbjct 2859479 AGTCTCAACACTAGACAAAGAGTGGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGT 2859538 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || |||||||| | | ||||||||| Sbjct 2859539 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 2859598 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | ||| | || || ||| || |||||||| Sbjct 2859599 TTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTG 2859658 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || | ||| || ||||||||||| | |||||| || Sbjct 2859659 ATGGTCTTCCTCGTCAGGGTCTTCACGAAAATCTGCATGTT 2859699 >seq64865 Length=1526523 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | | |||||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 730079 AGTCTCAACAAAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 730138 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||| || || || || ||||| || || |||||||| | | ||||||| Sbjct 730139 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCC 730198 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || | || | || || ||| | |||| | ||||| ||| || ||| |||| Sbjct 730199 TTACCCTGGACCTTGACCTTTACATTTTCTATGGGATCTGAGGGCTCGACCTCAGGAGTC 730258 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||| | || ||||||||||| | |||||| || Sbjct 730259 ATGGTCTTCCCCATCAGGGTCTTCACGAAAATCTGCATCTT 730299 >seq42836 Length=1893264 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 1011602 AGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 1011543 Query 151947 CCATCTTCTAGGCTT--TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| | ||| ||||| || ||||| || || |||||||| | | ||||||| Sbjct 1011542 CCATCTTCCA--CTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTT 1011485 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || || || || | ||| |||| | || || ||| || | |||| Sbjct 1011484 CCTTATCCTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGACCTTGAGAG 1011425 Query 152065 TAATAGTTTTGCCCGT-GAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || || || || ||||||||||| || | |||||| || Sbjct 1011424 TGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 1011381 >seq61258 Length=1460494 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 151888 GTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCC 151947 |||| || |||||||||||||| ||||| ||||| |||||||| | || |||| | | Sbjct 487683 GTCTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGTCAAAG-ACATC 487625 Query 151948 CATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCT 152007 ||||||| || ||| || || | ||| || || |||||||| | | | ||||||| Sbjct 487624 CATCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCCT 487565 Query 152008 TTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAA 152067 | || || ||||| || ||| | |||| | || | || || | |||| | Sbjct 487564 TATCCTGGATTTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAGAGA 487505 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | | || || || || ||||||||||| | |||||| Sbjct 487504 TGCTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 487468 >seq69229 Length=1436921 Score = 87.8 bits (96), Expect = 4e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||| ||||||| | ||| ||||| |||||||| || | ||||| | Sbjct 420450 AGTCTCAACACAAGAGGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 420509 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || || ||||| | ||||||||| Sbjct 420510 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCCTTCC 420569 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || || | ||| | || || || || |||||||| Sbjct 420570 TTATCCTGGATCTTGGCCTTTGCATTTACTATTGTATCCGAGGGCTTGACCTCAAGAGTG 420629 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || | || || ||||||| ||| | |||||| || Sbjct 420630 ATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 420670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152677753001720