Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_031902.1 Length=125114 Score E Sequences producing significant alignments: (Bits) Value seq66703 205 7e-48 >seq66703 Length=1304 Score = 205 bits (226), Expect = 7e-48 Identities = 449/669 (67%), Gaps = 18/669 (3%) Strand=Plus/Minus Query 52515 TGATCTTCATAGATATGAAGATTAATAATCTTTTGACGAGCAATACCTGGCTTAAGACCT 52574 ||||||||||| ||||| ||| | ||||| ||| ||| | || | || | || Sbjct 799 TGATCTTCATAAATATGTGCATTTACGATCTTATGATAAGCTTTTCCGGCCTCGTGGCCC 740 Query 52575 GTAATCTGTGCCATAATAGCTAGAAGTGCATAGCATTGCACCATATTAAATACTTGGCCC 52634 ||||| || ||||| | |||||| | | | | ||| | | |||||| ||| || Sbjct 739 GTAATTTGAGCCATGAGAGCTAGTAAGGTAAACACTTGAATCTGATTAAAATTTTGACCT 680 Query 52635 AGCAAGAAATCATTAGACCTCTGGAAAGAGTTTAGGTATAGTGTATCACCTAAAATAGAG 52694 | | |||| || | || | || | | || || | ||||||| | || Sbjct 679 AATGGTACATCACATGAACGTTGTGATGAAGTCAAATAAAGCTTGCCACCTAACAACGAA 620 Query 52695 AATTGATGGGTATGCATACACGGACGTAGGCATCCTTTACGAAATTCCCCAGGGTTCCAA 52754 ||| ||| ||||||||||| ||||||| ||||| || |||| || || || || | Sbjct 619 AATGTATGAGTATGCATACAAGGACGTAAACATCCCATATGAAACTCACCTGGATTGTAG 560 Query 52755 AAAGTTAAAATTTCTCCACGATCGTCAATCCCTCTTTTCAAATTATGATAGACTTTGGCT 52814 || |||| |||||| || || || ||||| || || ||| |||| ||||| || Sbjct 559 AAGGTTAGAATTTCACCTCGGTCATCAATACCGTTTCGCAAGTTATCATAGATCTTATGA 500 Query 52815 AACTGATCAAATACCATACCATCAGAATTAGTCCAATGACGTCCTTGAACACCATAGACT 52874 | ||| ||||| || || | |||||| ||| || || || |||||||| ||| Sbjct 499 AGCTGGTCAAACTCCTCTCCTACTGAATTACGCCACCTGCGCCCCTGTACACCATAAACT 440 Query 52875 CGTCCCATATCATCCTCGCCTTTACGGAATGGATTACCTAGCCAGGCAATATTTTCATTT 52934 || ||||||||||||| |||||||| | |||||| ||| ||| || ||||||||| Sbjct 439 CGGCCCATATCATCCTTACCTTTACGATAAGGATTAGCTAACCAAGCTTCATTTTCATTG 380 Query 52935 GCATTAGCATTCCATGTATTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCGTACCCA 52994 |||||||| |||||||||||| |||||||| || || || ||||| || || ||| Sbjct 379 GCATTAGCGTTCCATGTATTACATCCAATAGCTCGAAACTGAGCTGCGCTATCATAACCA 320 Query 52995 CGGAGATATCCGATCATTTCCATTATTGCTTGTTTAGCAAATGCT-TTACGAGTAGTTAC 53053 || ||||| || | | ||| || || || || ||| || || ||||||||||| Sbjct 319 CGTAGATACCCTAATAATTCTGCGATAGC-TGCTTTCCAATAACTCTTTCGAGTAGTTAC 261 Query 53054 TA--GCG-GCAGT-----------TCTCCT--GCTCCTACGTTAAAGGTAAAGTCTGCAT 53097 || || | ||| ||| | || |||||||| | || || |||| Sbjct 260 TAAGNCGAGTAGTCACTAAAGGAAACTCATTAGCGCCTACGTTGTATTCTAAATCAGCAT 201 Query 53098 CAATAATGGTTAGGCAACGAACCCCTGTTCTAGGATTCGTTACCCATACACCCTCTTCAA 53157 ||||| ||||| |||||| || || | |||| |||||||||||||| |||| Sbjct 200 TAATAACGGTTAAGCAACGCTTTCCAGTCCGTTCATTCTCGACCCATACACCCTCATCAA 141 Query 53158 GAATACGTT 53166 ||||||| Sbjct 140 CTATACGTT 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399862838839000