Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq75383 138 8e-28
seq33366 125 5e-24
seq70604 114 9e-21
seq25926 104 2e-17
seq64865 91.5 1e-13
seq42836 89.7 4e-13
seq61258 84.2 2e-11
seq69229 82.4 5e-11
>seq75383
Length=1910755
Score = 138 bits (152), Expect = 8e-28
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| ||
Sbjct 169008 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 168949
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || |||| | || |||||||| ||||||||||||||||| | |||||| ||||
Sbjct 168948 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGG 168889
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | ||||| ||||| ||||||| ||| | | | |||||||| | ||
Sbjct 168888 GGGGATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTCGGCTC 168829
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||| || || || || || ||||||||||| || ||||| |||||
Sbjct 168828 CACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 168778
Score = 136 bits (150), Expect = 3e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || | | |||||||| || ||| |||||| ||||||||||| ||
Sbjct 169236 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 169177
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || |||| | || |||||||| |||||||||||||||| | |||||| ||||
Sbjct 169176 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGG 169117
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || || || || ||||| ||| | |||| | |||||||| || |
Sbjct 169116 GGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCACTGGGCT 169058
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||| || || ||||| ||||| | ||||||||||||||| |||||
Sbjct 169057 CCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169006
Score = 136 bits (150), Expect = 3e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || | | |||||||| || ||| |||||| ||||||||||| ||
Sbjct 169464 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 169405
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || |||| | || |||||||| |||||||||||||||| | |||||| ||||
Sbjct 169404 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGG 169345
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || || || || ||||| ||| | |||| | |||||||| || |
Sbjct 169344 GGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCACTGGGCT 169286
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||| || || ||||| ||||| | ||||||||||||||| |||||
Sbjct 169285 CCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169234
Score = 136 bits (150), Expect = 3e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || | | |||||||| || ||| |||||| ||||||||||| ||
Sbjct 169692 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 169633
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || |||| | || |||||||| |||||||||||||||| | |||||| ||||
Sbjct 169632 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGG 169573
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || || || || ||||| ||| | |||| | |||||||| || |
Sbjct 169572 GGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCACTGGGCT 169514
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||| || || ||||| ||||| | ||||||||||||||| |||||
Sbjct 169513 CCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169462
Score = 136 bits (150), Expect = 3e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || | | |||||||| || ||| |||||| ||||||||||| ||
Sbjct 169920 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 169861
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || |||| | || |||||||| |||||||||||||||| | |||||| ||||
Sbjct 169860 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGG 169801
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || || || || ||||| ||| | |||| | |||||||| || |
Sbjct 169800 GGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCACTGGGCT 169742
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||| || || ||||| ||||| | ||||||||||||||| |||||
Sbjct 169741 CCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169690
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || |||| | || |||||||| || ||| |||||| ||||||||||| || |
Sbjct 170144 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 170085
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| |||| | || |||||||| |||||||||||||||| | |||||| |||| ||
Sbjct 170084 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 170025
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289
| || || || || ||||| ||| | |||| | |||||||| || |||||
Sbjct 170024 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCACTGGGCTCCAC 169966
Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || || ||||| ||||| | ||||||||||||||| |||||
Sbjct 169965 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169918
>seq33366
Length=1752596
Score = 125 bits (138), Expect = 5e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || || ||| || || ||||||||||| | || ||| | || |||
Sbjct 780156 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 780097
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||||||||| | | |||||| || | || | |||||||| |||
Sbjct 780096 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 780037
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | |||||||| || |||||||||| || || |||||
Sbjct 780036 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 779977
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||| |||||||||||||||||
Sbjct 779976 CCGGTCAGGGTTTTCACGAAGATTTGCAT 779948
>seq70604
Length=2882449
Score = 114 bits (126), Expect = 9e-21
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || ||||| ||| ||||||||| |||||||| || | | ||
Sbjct 1789362 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 1789421
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||| ||| | || |||||||||| | ||||| || | ||| | ||||||
Sbjct 1789422 CCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 1789481
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| | || |||| || || | || | ||||| | ||
Sbjct 1789482 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGACCTCAAGAGTG 1789541
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| |||||||||||||| || |||||
Sbjct 1789542 ATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCAT 1789579
>seq25926
Length=4460019
Score = 104 bits (114), Expect = 2e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || ||| ||| ||||||||| |||||| | || | | ||
Sbjct 2859479 AGTCTCAACACTAGACAAAGAGTGGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGT 2859538
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||| ||||| || |||||||||| | ||||| || | ||| | ||||||
Sbjct 2859539 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 2859598
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| | || || | || || | || || ||||| | ||
Sbjct 2859599 TTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTG 2859658
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
|| ||||| | ||| |||||||||||||| || |||||| ||
Sbjct 2859659 ATGGTCTTCCTCGTCAGGGTCTTCACGAAAATCTGCATGTTG 2859700
>seq64865
Length=1526523
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
|||||||||| || ||||| ||| ||||||||| |||||||| || | | |
Sbjct 730079 AGTCTCAACAAAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 730138
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || | ||| ||||| || |||||||||| | ||||| || | ||| | ||||||
Sbjct 730139 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCC 730198
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| || | ||| ||| | || |||||| || | || || ||||| ||
Sbjct 730199 TTACCCTGGACCTTGACCTTTACATTTTCTATGGGATCTGAGGGCTCGACCTCAGGAGTC 730258
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||| | |||||||||||||| || |||||
Sbjct 730259 ATGGTCTTCCCCATCAGGGTCTTCACGAAAATCTGCAT 730296
>seq42836
Length=1893264
Score = 89.7 bits (98), Expect = 4e-13
Identities = 154/220 (70%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| | ||||| ||| ||||||||| |||||||| || | | ||
Sbjct 1011602 AGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 1011543
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || |||| |||||||| |||||||||| | ||||| || | ||| | ||||||
Sbjct 1011542 CCATCTTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 1011483
Query 44240 TTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298
|| ||| ||||| | || || || |||| || || | || || |||| | ||
Sbjct 1011482 TTATCCTGGATCTTGACCATTACATCTT-CTATTGTTTCCGAGGGCTCGACCTTGAGAGT 1011424
Query 44299 AATCGTCTTTCCCGT-GAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| || || || |||||||| || || |||||
Sbjct 1011423 GATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 1011384
>seq61258
Length=1460494
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/221 (69%), Gaps = 1/221 (0%)
Strand=Plus/Minus
Query 44121 GTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT 44180
|||||| ||| || ||||| ||| ||||||||| |||||||| | || | | |
Sbjct 487683 GTCTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGTCAAA-GACATC 487625
Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240
| || ||||| || || || |||| ||||| | ||||| || | ||| ||||||||||
Sbjct 487624 CATCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCCT 487565
Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300
| ||| || || ||| | || |||| || || || | |||| | | |
Sbjct 487564 TATCCTGGATTTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAGAGA 487505
Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
| |||| || || |||||||||||||| || ||||| |||
Sbjct 487504 TGCTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCATG 487464
>seq69229
Length=1436921
Score = 82.4 bits (90), Expect = 5e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || |||| ||| ||||||||| |||||||| || | | |
Sbjct 420450 AGTCTCAACACAAGAGGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 420509
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||| ||||| || |||||||||| | || || || | | | | ||||||
Sbjct 420510 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCCTTCC 420569
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| || |||| || || | || | ||||| | ||
Sbjct 420570 TTATCCTGGATCTTGGCCTTTGCATTTACTATTGTATCCGAGGGCTTGACCTCAAGAGTG 420629
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| | || |||||||||| ||| || |||||
Sbjct 420630 ATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 420667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359651167546440
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