Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq72786 174 2e-38 seq56813 105 1e-17 >seq72786 Length=644084 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| || | |||||||||||| |||||||| || ||||| ||||| Sbjct 78554 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 78613 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| ||||| || ||||| |||||||| || ||||| ||||| ||||| Sbjct 78614 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 78673 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | || || ||| || | | || || |||||||| | Sbjct 78674 ACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATATGAGGCGGGTAGATCATTTCA 78733 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || | |||||||| Sbjct 78734 ACCTGAGTATCTTTGACAGTGGGAGGATACATCTCTCCATTAATCATCT 78782 Score = 167 bits (184), Expect = 3e-36 Identities = 223/310 (72%), Gaps = 0/310 (0%) Strand=Plus/Plus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| |||| | ||| | || || ||||| || || ||||| || |||| ||||||| Sbjct 76869 CATCTTGAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTACTGCAGATGAGAGACT 76928 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 |||| | || | |||| ||| || || || ||||| || || ||||| ||||||| Sbjct 76929 GAATTGAGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCC 76988 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | || || || || || |||| || ||||| |||||||| || || || Sbjct 76989 AGTACTCAGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCCGG 77048 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 || | ||| |||| || |||||||||| |||||||||||| || ||||| | ||| Sbjct 77049 CTTCTACCATGGTCTCCCCAAAGATGGCGTCGGGACGGGGCTTCTCTACCAAAAGGGCGG 77108 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 |||||||||| || || | ||||||||| || || | || ||||| || |||| Sbjct 77109 GATACAGCTCCATGGCATCTATGTCTCCGTAGAGCGCTTCTAACTCTGCAGCCATTTCCT 77168 Query 8577 TTTCTCCTGT 8586 | |||||||| Sbjct 77169 TCTCTCCTGT 77178 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 79562 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 79621 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 79622 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 79681 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCT 9827 ||| |||| | || | ||||| ||||| |||||| | | || ||| || |||| Sbjct 79682 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTCGAATCAGGAAGCT 79740 >seq56813 Length=1038512 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || | |||||||| || |||||||| | ||| || || Sbjct 80911 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGCTGCTCGTCGCCCCAGGTGGGGTGC 80970 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | |||||||| |||||||| | | Sbjct 80971 TCAGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCAGATCGTGGCGTAGAGC 81030 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || ||||||| Sbjct 81031 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACAGCCA 81073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716183938572800