Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq72786 174 2e-38
seq56813 105 1e-17
>seq72786
Length=644084
Score = 174 bits (192), Expect = 2e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| ||||| || | |||||||||||| |||||||| || ||||| |||||
Sbjct 78554 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 78613
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||||||||||| ||||| || ||||| |||||||| || ||||| ||||| |||||
Sbjct 78614 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 78673
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || ||||| | || || ||| || | | || || |||||||| |
Sbjct 78674 ACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATATGAGGCGGGTAGATCATTTCA 78733
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
||||| |||||||| | ||| |||||||| || || | ||||||||
Sbjct 78734 ACCTGAGTATCTTTGACAGTGGGAGGATACATCTCTCCATTAATCATCT 78782
Score = 167 bits (184), Expect = 3e-36
Identities = 223/310 (72%), Gaps = 0/310 (0%)
Strand=Plus/Plus
Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336
|||| |||| | ||| | || || ||||| || || ||||| || |||| |||||||
Sbjct 76869 CATCTTGAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTACTGCAGATGAGAGACT 76928
Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396
|||| | || | |||| ||| || || || ||||| || || ||||| |||||||
Sbjct 76929 GAATTGAGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCC 76988
Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456
||||| | || || || || || |||| || ||||| |||||||| || || ||
Sbjct 76989 AGTACTCAGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCCGG 77048
Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516
|| | ||| |||| || |||||||||| |||||||||||| || ||||| | |||
Sbjct 77049 CTTCTACCATGGTCTCCCCAAAGATGGCGTCGGGACGGGGCTTCTCTACCAAAAGGGCGG 77108
Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576
|||||||||| || || | ||||||||| || || | || ||||| || ||||
Sbjct 77109 GATACAGCTCCATGGCATCTATGTCTCCGTAGAGCGCTTCTAACTCTGCAGCCATTTCCT 77168
Query 8577 TTTCTCCTGT 8586
| ||||||||
Sbjct 77169 TCTCTCCTGT 77178
Score = 111 bits (122), Expect = 2e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | ||
Sbjct 79562 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 79621
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
||| || || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 79622 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 79681
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCT 9827
||| |||| | || | ||||| ||||| |||||| | | || ||| || ||||
Sbjct 79682 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTCGAATCAGGAAGCT 79740
>seq56813
Length=1038512
Score = 105 bits (116), Expect = 1e-17
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||| | |||||| || | |||||||| || |||||||| | ||| || ||
Sbjct 80911 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGCTGCTCGTCGCCCCAGGTGGGGTGC 80970
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||| | || ||||| | |||||| || | |||||||| |||||||| | |
Sbjct 80971 TCAGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCAGATCGTGGCGTAGAGC 81030
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
||||||||||| | ||| ||||| |||| || || |||||||
Sbjct 81031 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACAGCCA 81073
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716183938572800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |