Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq33366 159 8e-34
seq75383 145 2e-29
seq70604 131 4e-25
seq25926 118 3e-21
seq64865 109 1e-18
seq61258 105 2e-17
>seq33366
Length=1752596
Score = 159 bits (176), Expect = 8e-34
Identities = 170/222 (77%), Gaps = 7/222 (3%)
Strand=Plus/Plus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| |||| ||||||||||| || || || || || |||||||| ||||
Sbjct 779940 AGGTCAAAATGC---AAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGG 779996
Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
||| ||| || |||||||||||||| || || ||||| ||||| || ||||| ||
Sbjct 779997 TGG--AGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 780054
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
|| || |||||||| | || ||||| ||||| || ||||| |||||||| | |||||
Sbjct 780055 TCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCT 780114
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
| | ||||| ||| | || ||||| || || ||||| || ||
Sbjct 780115 TTCTGATTACAACATTCAGAAAGAGTCGACCCTGCACCTGGT 780156
>seq75383
Length=1910755
Score = 145 bits (160), Expect = 2e-29
Identities = 166/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 169009 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 169066
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || |||||||| || ||||| || |||||||
Sbjct 169067 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 169126
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 169127 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 169186
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || | | ||||||
Sbjct 169187 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 169227
Score = 145 bits (160), Expect = 2e-29
Identities = 166/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 169237 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 169294
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || |||||||| || ||||| || |||||||
Sbjct 169295 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 169354
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 169355 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 169414
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || | | ||||||
Sbjct 169415 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 169455
Score = 145 bits (160), Expect = 2e-29
Identities = 166/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 169465 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 169522
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || |||||||| || ||||| || |||||||
Sbjct 169523 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 169582
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 169583 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 169642
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || | | ||||||
Sbjct 169643 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 169683
Score = 145 bits (160), Expect = 2e-29
Identities = 166/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 169693 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 169750
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || |||||||| || ||||| || |||||||
Sbjct 169751 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 169810
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 169811 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 169870
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || | | ||||||
Sbjct 169871 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 169911
Score = 145 bits (160), Expect = 2e-29
Identities = 158/208 (76%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 169921 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 169978
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || |||||||| || ||||| || |||||||
Sbjct 169979 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 170038
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 170039 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 170098
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || ||||| || ||
Sbjct 170099 TCCAGAAGGAGTCCACTCTGCACCTGGT 170126
Score = 136 bits (150), Expect = 1e-26
Identities = 164/221 (74%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || || || || ||||| || ||||| ||||| || |||||||| || ||
Sbjct 168781 CAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGA--GCCGAGTG 168838
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| ||||| ||||| || || |||||||| ||||| || |||||||
Sbjct 168839 ACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCAGC 168898
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 168899 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 168958
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || ||||| || || | | ||||||
Sbjct 168959 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 168999
>seq70604
Length=2882449
Score = 131 bits (144), Expect = 4e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || || || || ||||| || ||||| | ||| ||
Sbjct 1789576 CAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCCAGCCCTCGGAT 1789517
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| ||||| || |||||||| ||||| |||||||||
Sbjct 1789516 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 1789457
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || | || || ||||||||| | ||| | | || || ||| |
Sbjct 1789456 AGACTGATCTTTGCTGGCAGGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 1789397
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || ||||| || ||||||||
Sbjct 1789396 CAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 1789362
>seq25926
Length=4460019
Score = 118 bits (130), Expect = 3e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || | || || ||||| || ||||| || ||| ||
Sbjct 2859693 CAGATTTTCGTGAAGACCCTGACGAGGAAGACCATCACTCTTGAGGTCGAGCCCTCGGAT 2859634
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | || || || || ||||| ||||| || |||||||| ||||| |||||||||
Sbjct 2859633 ACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 2859574
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || || ||||||||| | ||| | | || | ||| |
Sbjct 2859573 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGCAACATT 2859514
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || ||| || ||||||||
Sbjct 2859513 CAAAAGGAGTCCACTCTTTGTCTAGTGTTGAGACT 2859479
>seq64865
Length=1526523
Score = 109 bits (120), Expect = 1e-18
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || | || || || || || | ||||| || ||||||
Sbjct 730293 CAGATTTTCGTGAAGACCCTGATGGGGAAGACCATGACTCCTGAGGTCGAGCCCTCAGAT 730234
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||| || || || || ||| | |||| || |||||| ||||| |||||||||
Sbjct 730233 CCCATAGAAAATGTAAAGGTCAAGGTCCAGGGTAAGGAAGGAGCTCCTCCTGACCAGCAA 730174
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || || |||||||| | ||| | | || || ||| |
Sbjct 730173 AGACTGATCTTTGCTGGCAAGCAACTGAAAGATGGATGTACTTTGTCTGACTACAACATT 730114
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || |||||| | ||||||||
Sbjct 730113 CAAAAGGAGTCCACTCTTCATCTTTTGTTGAGACT 730079
>seq61258
Length=1460494
Score = 105 bits (116), Expect = 2e-17
Identities = 156/220 (71%), Gaps = 1/220 (0%)
Strand=Plus/Plus
Query 177918 ATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGC 177977
||| | || ||||||||||| || || ||||| || | ||| | ||| |||| | |
Sbjct 487465 ATGATGCAGATTTTCGTGAAGACCCTGACAGGGAAGAGCATCTCTCTCAAGGTCAAGCCC 487524
Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037
| || || || || || || || || || ||||| || ||||| | ||||| |||
Sbjct 487525 TTGGATACAATAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGTGTTCCTCCTGAC 487584
Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097
|||||| |||| ||| | || || ||||| || |||||||| | | || | || | ||
Sbjct 487585 CAGCAAAGACTGATCGTTGCTGGCAAACAACTGGAAGATGG-ATGTCTTTGACCAACTAC 487643
Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGAC 178137
||| | ||||| || || || || |||||||| ||||||
Sbjct 487644 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGCTGAGAC 487683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202538708640080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |