Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq33366 159 8e-34 seq75383 145 2e-29 seq70604 131 4e-25 seq25926 118 3e-21 seq64865 109 1e-18 seq61258 105 2e-17 >seq33366 Length=1752596 Score = 159 bits (176), Expect = 8e-34 Identities = 170/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| ||||||||||| || || || || || |||||||| |||| Sbjct 779940 AGGTCAAAATGC---AAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGG 779996 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| ||| || |||||||||||||| || || ||||| ||||| || ||||| || Sbjct 779997 TGG--AGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 780054 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| ||||| || ||||| |||||||| | ||||| Sbjct 780055 TCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCT 780114 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| | || ||||| || || ||||| || || Sbjct 780115 TTCTGATTACAACATTCAGAAAGAGTCGACCCTGCACCTGGT 780156 >seq75383 Length=1910755 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 169009 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 169066 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 169067 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 169126 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 169127 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 169186 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 169187 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 169227 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 169237 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 169294 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 169295 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 169354 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 169355 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 169414 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 169415 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 169455 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 169465 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 169522 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 169523 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 169582 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 169583 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 169642 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 169643 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 169683 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 169693 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 169750 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 169751 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 169810 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 169811 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 169870 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 169871 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 169911 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 169921 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 169978 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 169979 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 170038 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 170039 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 170098 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 170099 TCCAGAAGGAGTCCACTCTGCACCTGGT 170126 Score = 136 bits (150), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || ||||| ||||| || |||||||| || || Sbjct 168781 CAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGA--GCCGAGTG 168838 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || || |||||||| ||||| || ||||||| Sbjct 168839 ACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCAGC 168898 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 168899 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 168958 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 168959 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 168999 >seq70604 Length=2882449 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| || ||||| | ||| || Sbjct 1789576 CAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCCAGCCCTCGGAT 1789517 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 1789516 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 1789457 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || | || || ||||||||| | ||| | | || || ||| | Sbjct 1789456 AGACTGATCTTTGCTGGCAGGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 1789397 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || |||||||| Sbjct 1789396 CAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 1789362 >seq25926 Length=4460019 Score = 118 bits (130), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || | || || ||||| || ||||| || ||| || Sbjct 2859693 CAGATTTTCGTGAAGACCCTGACGAGGAAGACCATCACTCTTGAGGTCGAGCCCTCGGAT 2859634 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 2859633 ACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 2859574 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || | ||| | Sbjct 2859573 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGCAACATT 2859514 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||| || |||||||| Sbjct 2859513 CAAAAGGAGTCCACTCTTTGTCTAGTGTTGAGACT 2859479 >seq64865 Length=1526523 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || | || || || || || | ||||| || |||||| Sbjct 730293 CAGATTTTCGTGAAGACCCTGATGGGGAAGACCATGACTCCTGAGGTCGAGCCCTCAGAT 730234 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| || || || || ||| | |||| || |||||| ||||| ||||||||| Sbjct 730233 CCCATAGAAAATGTAAAGGTCAAGGTCCAGGGTAAGGAAGGAGCTCCTCCTGACCAGCAA 730174 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || |||||||| | ||| | | || || ||| | Sbjct 730173 AGACTGATCTTTGCTGGCAAGCAACTGAAAGATGGATGTACTTTGTCTGACTACAACATT 730114 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||| | |||||||| Sbjct 730113 CAAAAGGAGTCCACTCTTCATCTTTTGTTGAGACT 730079 >seq61258 Length=1460494 Score = 105 bits (116), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 177918 ATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGC 177977 ||| | || ||||||||||| || || ||||| || | ||| | ||| |||| | | Sbjct 487465 ATGATGCAGATTTTCGTGAAGACCCTGACAGGGAAGAGCATCTCTCTCAAGGTCAAGCCC 487524 Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 | || || || || || || || || || ||||| || ||||| | ||||| ||| Sbjct 487525 TTGGATACAATAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGTGTTCCTCCTGAC 487584 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 |||||| |||| ||| | || || ||||| || |||||||| | | || | || | || Sbjct 487585 CAGCAAAGACTGATCGTTGCTGGCAAACAACTGGAAGATGG-ATGTCTTTGACCAACTAC 487643 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGAC 178137 ||| | ||||| || || || || |||||||| |||||| Sbjct 487644 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGCTGAGAC 487683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202538708640080