Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7110 196 5e-45 seq1386 194 2e-44 seq8888 102 8e-17 >seq7110 Length=16720443 Score = 196 bits (216), Expect = 5e-45 Identities = 589/910 (65%), Gaps = 51/910 (6%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || |||| || | || || | |||||||| || || || || Sbjct 13122553 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGT 13122494 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || ||||||||||| || ||||| ||||| || ||||||| || | | |||| Sbjct 13122493 GAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAA--AACCCA 13122436 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 | || || | ||| || || || ||||| || || || ||| || ||| |||| Sbjct 13122435 GCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCA 13122376 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || || || || | || || ||||| | || || ||||| ||| || | Sbjct 13122375 TCCCAATGAGCTTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT 13122316 Query 16902 CCTTAATAAT--ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACAT 16959 || || | | | |||| | ||| || ||| | ||| || ||||| ||||| Sbjct 13122315 TGACGATTATTTATTTG--ACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACAT 13122258 Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 ||| || || || || || ||||| |||||||||||||| |||||||| || |||||||| Sbjct 13122257 CAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGT 13122198 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 | ||||||||| |||||||||||| | ||| ||||||| || || || |||||||| Sbjct 13122197 GAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAA 13122138 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTC-----------GGCG------ 17122 ||| || || || || | ||||| || | || ||||| || | Sbjct 13122137 GAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAAT 13122078 Query 17123 -----TACGT-----------------CGCGTCTTTGTTACGAATCCATTTCTGCACCCA 17160 ||||| || ||||||| | ||||| | |||| Sbjct 13122077 GCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCA 13122018 Query 17161 CTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTTTT 17218 || || || | ||||| ||| ||| || || ||||| || | | || ||| |||| Sbjct 13122017 ATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTTTC 13121958 Query 17219 TCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTC 17278 | | | | || || || || || ||||| || || |||||||| || |||||||| Sbjct 13121957 TTTGGAATCTTGA--ATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTT 13121900 Query 17279 TCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAG 17338 |||||||| || || || || || || | ||||||||| || |||||||| | Sbjct 13121899 TCCATGGCAATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTGGCTA 13121840 Query 17339 AATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATA 17398 | | ||| | || ||||| || || | |||||| || || || | || | || | | Sbjct 13121839 AGCCACTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAGGACA 13121780 Query 17399 TGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGAT 17458 ||| | |||||||| | | || || | || | | || || | || ||||| Sbjct 13121779 TGCGAAGTGAAATATCTCTACTCAGGCTTCAGGGCTTCCTGGTGCTGAATGTCCTTGGAA 13121720 Query 17459 ATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATA 17518 | ||||| || || | ||||| || |||| | || || ||| |||| | ||||||| Sbjct 13121719 AGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCAAATA 13121660 Query 17519 TCATTGTATT 17528 ||| ||||| Sbjct 13121659 TCACGGTATT 13121650 >seq1386 Length=4420875 Score = 194 bits (214), Expect = 2e-44 Identities = 431/651 (66%), Gaps = 43/651 (7%) Strand=Plus/Plus Query 16919 ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAA 16978 |||| | ||| || ||| | ||| || ||||| |||||||| || || || || || Sbjct 837466 ACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAG 837525 Query 16979 TGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCT 17038 ||||| |||||||||||||| |||||||| || |||||||| | ||||||||| ||| Sbjct 837526 TGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCT 837585 Query 17039 CGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGAT 17098 ||||| || | ||| ||||||| || || || ||||||||||| || || || || | Sbjct 837586 CGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCA 837645 Query 17099 GCAAACGCGATTAATCGTTC-----------GGCG-----------TACGT--------- 17127 ||||| || | || ||||| || | ||||| Sbjct 837646 GCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTTGGAGAACA 837705 Query 17128 --------CGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATG 17179 || ||||||| | ||||| | |||| || || || | ||||| Sbjct 837706 ATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACA 837765 Query 17180 CAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATAT 17237 ||| ||| || || || || || | | || ||| |||| | || | || | || | Sbjct 837766 CAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCT-TTGGA-ATCTTTAATGT 837823 Query 17238 ACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATC 17297 | || || ||||| || || |||||||| || || ||||| |||||||| || | || | Sbjct 837824 AAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAGC 837883 Query 17298 CGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTT 17357 | || || || | |||||||| || |||||||| | || | | | | |||| Sbjct 837884 CATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTAAACCAAGTTTT 837943 Query 17358 CGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTT 17417 | || || ||||| || || || || || || |||| | |||| |||||||||| | | Sbjct 837944 CATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGCAAAATGAAATATCTCT 838003 Query 17418 CGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGG 17477 | || || | || | ||||| || | || ||||| | ||||| ||||| | | Sbjct 838004 CCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTG 838063 Query 17478 TCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATT 17528 ||||||| |||| | || || |||||||| | ||||||||||| ||||| Sbjct 838064 TCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATT 838114 >seq8888 Length=9016713 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||| |||||||| || |||||||| | ||||||||| |||||||| | Sbjct 1702276 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 1702335 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || ||||||||||| || || || || | ||||| | Sbjct 1702336 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 1702395 Query 17106 C 17106 | Sbjct 1702396 C 1702396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517475886607680