Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq7110 203 3e-47 seq1386 192 6e-44 seq1453 114 1e-20 seq8888 93.3 4e-14 >seq7110 Length=16720443 Score = 203 bits (224), Expect = 3e-47 Identities = 599/924 (65%), Gaps = 47/924 (5%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | || || |||||||||| || || || | Sbjct 13122553 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGT 13122494 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||| ||||| || ||||||| ||| | |||| Sbjct 13122493 GAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAAC--CTTGCTAAAACCCA 13122436 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 | ||| | | ||| ||||| || ||||| || || || ||| || |||||| | Sbjct 13122435 GCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCA 13122376 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 | || || || || | || || | || | || | ||||||||| ||| || | Sbjct 13122375 TCCCAATGAGCTTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT 13122316 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 || || | || ||| || || ||| | || |||||||| ||||| | Sbjct 13122315 TGACGATTATTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCA 13122256 Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 | || || ||||| || |||| || ||||||||||| |||||||| |||||||| || | Sbjct 13122255 GGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGA 13122196 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319 || ||||| |||||||||||| | ||||||||||| ||||| || || ||||||| Sbjct 13122195 GGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGA 13122136 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC-CGCGTACGT-----AGCATCTT 16373 | || || || || | ||||| || | || ||||| | ||||| | || Sbjct 13122135 AGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGC 13122076 Query 16374 TATTACG----------------AATCCATTTCTGT-----------------ACCCATT 16400 |||||| ||| | | | ||| |||| | Sbjct 13122075 CATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAAT 13122016 Query 16401 CGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTC 16458 | || || | |||| |||| ||| || || ||||| || | | || ||| |||| | Sbjct 13122015 CTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTTTCTT 13121956 Query 16459 CTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTC 16518 |||| | || || || || ||||| || | ||| |||||||| || |||||||| || Sbjct 13121955 TGGAATCTTGA--ATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTTTC 13121898 Query 16519 TATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAA 16578 ||||| || || || |||||||| | | || |||| || || ||||| | || Sbjct 13121897 CATGGCAATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTGGCTAAG 13121838 Query 16579 TCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG 16638 | ||| ||||||| ||||| || | ||||||||||| ||| | || | || | || Sbjct 13121837 CCACTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAGGACATG 13121778 Query 16639 CTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATAT 16698 | | |||||||| | | |||| | || | | | | | || ||||| | Sbjct 13121777 CGAAGTGAAATATCTCTACTCAGGCTTCAGGGCTTCCTGGTGCTGAATGTCCTTGGAAAG 13121718 Query 16699 ATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATC 16758 ||||| || || | |||||| ||| |||| | || || ||| |||| | ||||||||| Sbjct 13121717 GTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCAAATATC 13121658 Query 16759 ATTGTATTGTATGGGAAATACGAC 16782 | ||||| || ||||| | ||| Sbjct 13121657 ACGGTATTCGATAGGAAAGATGAC 13121634 >seq1386 Length=4420875 Score = 192 bits (212), Expect = 6e-44 Identities = 425/640 (66%), Gaps = 43/640 (7%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 |||||||| ||||| || || || ||||| || |||| || ||||||||||| |||||| Sbjct 837493 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGT 837552 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || |||||||| || | || ||||| |||||||| || | ||||||||||| ||| Sbjct 837553 TCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCA 837612 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGT-A 16362 || || || |||||||| || || || || | ||||| || | || ||||| | | | Sbjct 837613 AAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTA 837672 Query 16363 CGTAGCAT--CTTT---ATTACG----------------AATCCATTTCTGTACCC---- 16397 ||| | | | | |||||| ||| | | | ||| ||| Sbjct 837673 CGTTGGAGAACAATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATC 837732 Query 16398 -------------ATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAAC 16444 | || || || | |||| |||| ||| || || || || || || Sbjct 837733 CAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAG 837792 Query 16445 A--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTT 16502 | | ||| |||| | |||| | | || || || ||||| || | ||| ||||||| Sbjct 837793 AGAAATTCCCTTTCTTTGGAATCTTTA--ATGTAAGTGTCAATGAGGAGACTATACATTT 837850 Query 16503 CTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562 | || || ||||| || ||||| || | || |||||||| || | || |||| || | Sbjct 837851 CAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACAGGCTTCCGTAATCT 837910 Query 16563 GTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAA 16622 | ||||| | ||| | | ||| ||| ||||| || || || |||||||| |||| Sbjct 837911 GAACTTCTTGGCTAAACTGCTAAACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAA 837970 Query 16623 AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTT 16682 | || |||| | ||| |||||||||| | || |||| | || | ||| | | Sbjct 837971 AGAAAGCCAGAACATGCAAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCT 838030 Query 16683 TTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTAT 16742 | || ||||| | ||||| ||||| | ||||||||| |||| | || || |||| Sbjct 838031 GAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTAT 838090 Query 16743 ACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 |||| | ||||||||||| ||||| || ||||| | ||| Sbjct 838091 ACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGAC 838130 >seq1453 Length=4135625 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| ||||| ||||| Sbjct 1830592 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 1830533 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 1830532 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1830473 Query 16344 C 16344 | Sbjct 1830472 C 1830472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| ||||| || ||||| || ||||| ||||||||||| || ||||||||||||||||| Sbjct 1844790 AACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCCATAAAATCAAA 1844731 Query 15985 GGGATT 15990 |||||| Sbjct 1844730 GGGATT 1844725 >seq8888 Length=9016713 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| |||||||| |||||||| || | || ||||| |||||||| || Sbjct 1702278 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 1702337 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 1702338 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGC 1702396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511345512480320