Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq780 244 8e-60 seq2230 161 8e-35 >seq780 Length=6765806 Score = 244 bits (270), Expect = 8e-60 Identities = 541/809 (67%), Gaps = 7/809 (1%) Strand=Plus/Plus Query 18538 TTCGGAAACGCGATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGAT 18597 ||||||| || || ||||| | ||| || | || | || || ||||| || || | Sbjct 31791 TTCGGAAGGATGACCGCACAGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCT 31850 Query 18598 ACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCG 18657 ||| || || ||||||||||||| | || || || |||||||| || | || || Sbjct 31851 ACAGCCTGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGCAAGGGTGTTT 31910 Query 18658 TGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAG 18717 ||| |||||| | ||||||||| || || || | | || || || | | || | Sbjct 31911 CGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGG 31970 Query 18718 ATATACACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATA 18777 | | || |||||| | || || | | || | | || || ||| | Sbjct 31971 GAGTGAAAATCTGGGATGCCAATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCA 32030 Query 18778 AAAGA-CACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCG 18836 ||| || | |||| | | ||||| |||| ||||| |||||||| |||||||| || Sbjct 32031 CCAGAGCAGAAGGGG-ATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCC 32089 Query 18837 GAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTT 18896 ||||| ||||| | ||| | |||| | | |||||| | ||||| ||||||| || Sbjct 32090 GAATACAAAGATATGGATTCAGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTG 32149 Query 18897 ATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCA 18956 | || ||||| ||||| ||||| || | || |||| || | | ||||||||||| Sbjct 32150 ACTGACACAATCAAAACCAACCCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCA 32209 Query 18957 AAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCA 19016 || ||| |||| | |||| ||||| || || ||| | | || ||||| ||||| | Sbjct 32210 AAAGATCTCCCTCTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTG 32269 Query 19017 AACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCG 19076 || ||||| | |||||||| | ||||||| || || || |||||||| || || || Sbjct 32270 AATGGTGAGCTGTCCTGCCAGCTGTACCAGATGTCAGGAGACATGGGCCTGGGTGTGCCC 32329 Query 19077 TTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAA 19136 |||||||| || | || || || |||||| | || || || || || || || Sbjct 32330 TTCAACATCGCCAGCTACGCCCT-----GCTACATGATCGCACACGTCACGGGCCTGAAG 32384 Query 19137 ACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCT 19196 | || || || | || || |||| |||||||| |||||| ||||||| || || | Sbjct 32385 CCAGGTGACTTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCCG 32444 Query 19197 TTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAAT 19256 | ||| | ||||| ||| |||| ||||| || || | ||| ||||||| Sbjct 32445 CTGAAAATTCAGCTTCAGCGAGAACCAAGGCCTTTCCCCAAGCTCAGAATCCTTCGAAAA 32504 Query 19257 GTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAc 19316 || | || | ||||| || || || |||||| |||| || || ||||| ||| Sbjct 32505 GTTGAGAAAATTGATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCAC 32564 Query 19317 cccccccTAAAAATGGAAATGGCTCTTTA 19345 || | | ||||||||||||||| |||| Sbjct 32565 CCGACTATTAAAATGGAAATGGCTGTTTA 32593 >seq2230 Length=20112346 Score = 161 bits (178), Expect = 8e-35 Identities = 380/566 (67%), Gaps = 12/566 (2%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 ||||| | ||||| |||| |||| |||||||| | ||| | || ||||| ||||| Sbjct 11223567 GGGGATTTAGGCCCAGTTTATAGCTTTCAGTGGAGGCCTTTGGTGGCTGAATACAAAGA- 11223509 Query 18849 TGTCAATCAAACT--ATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAA 18906 ||| || || | ||| || |||||| | || || ||||||| || || || |||| Sbjct 11223508 TGTGGATTTAAATGTATTCACGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGACACAA 11223449 Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966 | ||||| ||||| ||| | || |||| ||| ||| ||||||||| |||| ||| Sbjct 11223448 TCAAAACCAACCCTGAAGACAGAAGAATCATTCTATGTGCTTGGAATCAAAAGATCTTCC 11223389 Query 18967 CCTTAA----TGGTAC--TACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACG 19020 || | || || | || | || || | | || || || ||||| | ||| Sbjct 11223388 TCTCATACCCTGCCACCCTGCCCCTGTGCCATGCCCTTTGCCACTTCTACGTGGTGAACC 11223329 Query 19021 GTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCA 19080 ||| | |||||| | | |||||||| || || || | |||||| || || | |||| Sbjct 11223328 ATGAGCTGTCCTGC-AGCTGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTCCTTCA 11223270 Query 19081 ACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCG 19140 || | || | ||||| || || |||||||| | || || | ||||| || || | | Sbjct 11223269 ACGTCGCCAGCTATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAAGCCAG 11223210 Query 19141 GAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTT-TA 19199 | || | | || || |||| |||||||| |||||| || |||| || || ||| | Sbjct 11223209 GTGACTCTGTACACACTTTGGGAGATGCACACATTTACCTGGATCACATTGA-GCTGCTG 11223151 Query 19200 AAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTA 19259 ||| ||||||| || |||| ||||| || || ||||| || |||| || Sbjct 11223150 AAAATGCAGCTTCAGGGAGAACCAAGGCCTTTCCCAAAGCTCAAAATCCTTGGAAAAGTT 11223091 Query 19260 ACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAcccc 19319 | || | ||||| || || || |||||| |||| || || | ||| || ||| Sbjct 11223090 GAGAAAATCTATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCATCCC 11223031 Query 19320 ccccTAAAAATGGAAATGGCTCTTTA 19345 | | ||||||||||||||| |||| Sbjct 11223030 ACTATTAAAATGGAAATGGCTGTTTA 11223005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399451532140920