Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1386 333 3e-86 seq7110 284 1e-71 seq1508 140 4e-28 seq8888 132 6e-26 seq1453 102 1e-16 seq5999 96.9 4e-15 >seq1386 Length=4420875 Score = 333 bits (368), Expect = 3e-86 Identities = 455/638 (71%), Gaps = 42/638 (7%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 ||||| ||||||| || || || || ||||||| |||||||||||| ||||| | ||| Sbjct 837496 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCA 837555 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 |||||||| ||||| |||||||| || || || ||||| ||||| ||||| || ||||| Sbjct 837556 TTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAA 837615 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACC- 24298 || ||||||||||| |||||||| ||||| |||||||| | | | |||||||| || Sbjct 837616 GAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGT 837675 Query 24299 -GGCGC----TGTCAT---GT----------------AT-CCACTTTT-----GA----- 24323 || | || ||| || || || |||| || Sbjct 837676 TGGAGAACAATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAG 837735 Query 24324 ------GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 24377 |||||||| |||||||| |||||||||||||||||||| ||||| || |||||| Sbjct 837736 CACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGA 837795 Query 24378 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 24437 | | |||| || |||||||| || || ||||| | |||||||||||||| ||| Sbjct 837796 AATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAA 837855 Query 24438 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 24497 || |||||||| ||||| ||| | || || |||||||| | || || |||||||| ||| Sbjct 837856 TGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACAGGCTTCCGTAATCTGAACT 837915 Query 24498 TCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 24557 ||| | ||| | | | || |||||||| ||||| || ||||| |||||||| || Sbjct 837916 TCTTGGCTAAACTGCTAAACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAA 837975 Query 24558 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 24617 |||| ||||| || |||||| | || || || | || | ||| | | || Sbjct 837976 GCCAGAACATGCAAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATG 838035 Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 24677 || || || | ||||| ||||| |||||||||| || ||||| || || |||||||| Sbjct 838036 TCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATC 838095 Query 24678 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | ||| || ||||| |||| || ||||| || ||||| Sbjct 838096 TGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 838133 >seq7110 Length=16720443 Score = 284 bits (314), Expect = 1e-71 Identities = 644/970 (66%), Gaps = 45/970 (5%) Strand=Plus/Minus Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 23845 ||| |||||| |||| || | ||| ||| ||| || ||||| |||||||| | Sbjct 13122602 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACATCACTCCCATCCT 13122543 Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905 || || || || || | || || | || ||||| || ||||| | ||| ||||| || Sbjct 13122542 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 13122483 Query 23906 CATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAA 23965 ||| || || ||||||| || | | | | |||| |||| || || | Sbjct 13122482 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCCGCATAAG 13122423 Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025 ||| ||||| || || || || || ||||||| |||||||| || || || || Sbjct 13122422 TCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 13122363 Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 24085 |||| || ||| | || || || || ||||| || || || | || || | Sbjct 13122362 CACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTA 13122303 Query 24086 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 24145 | | ||| | | || ||| | | | ||||| ||||||| || || || || Sbjct 13122302 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTC 13122243 Query 24146 GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 24205 ||||||| |||||||||||| ||||| | ||| |||||||| ||||| |||||||| || Sbjct 13122242 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAG 13122183 Query 24206 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTAC 24265 || || || || ||||| ||||| || ||||| || ||||||||||| |||||||| || Sbjct 13122182 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 13122123 Query 24266 TGCCGCAAAGGCAATAAGTCTTTCTCCATAACC--GGCGC----TGTCAT---GT----- 24311 ||| |||||||| | | | |||||||| || || | || ||| || Sbjct 13122122 TGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTTGGAG 13122063 Query 24312 -----------AT-CCACTTTT-----GA-----------GCCCAATCGGCCTTCTTTTT 24343 || || |||| || |||||||| |||||||| || Sbjct 13122062 AACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTT 13122003 Query 24344 TACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 24403 |||||||||||||||||| || || || |||||| | | |||| || ||||| || Sbjct 13122002 TACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTGAAT 13121943 Query 24404 ATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 24463 || || ||||| | |||||||||||||||||||| |||||||| ||||| ||||| || Sbjct 13121942 GTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTTTCCATGGCAATTTGGAA 13121883 Query 24464 TCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATT 24523 || |||||| | || || |||||||| |||||| | || | || | | || Sbjct 13121882 GCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCACTCCACCAGGTT 13121823 Query 24524 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 24583 |||||| |||| |||||||| |||||| | || | || ||||| | |||||| | Sbjct 13121822 TTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAGGACATGCGAAGTGAAATATCT 13121763 Query 24584 TTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCAC 24643 | || || | || | | | | || || || || | ||||| || || | Sbjct 13121762 CTACTCAGGCTTCAGGGCTTCCTGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGC 13121703 Query 24644 TGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 24703 ||||| || || ||||| || || ||| |||| | ||| || ||| | |||| || || Sbjct 13121702 CGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCAAATATCACGGTATTCGATAGG 13121643 Query 24704 AAAAATAACA 24713 ||| || ||| Sbjct 13121642 AAAGATGACA 13121633 >seq1508 Length=3848527 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 149381 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 149440 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 149441 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 149500 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 149501 CTGTTTCTTATACCATA 149517 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| |||||||||||||| | || || ||||| || || || || || | Sbjct 179969 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCGATCCTTGCTGCCAGGA 180028 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| |||| || | |||||| || | Sbjct 180029 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAGAGTATCTA 180088 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 180089 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 180134 Score = 100 bits (110), Expect = 3e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | || || || |||||||| || || || || || || | Sbjct 153724 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 153783 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||||| |||||| | || || ||| | || ||||| || | Sbjct 153784 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 153843 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 153844 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 153901 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 158207 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 158266 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 158267 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 158326 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 158327 AGGCTCCAGGTAAAT 158341 >seq8888 Length=9016713 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | ||| |||||||| ||||| |||||||| || || || |||| Sbjct 1702276 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 1702335 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 1702336 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 1702395 Query 24277 C 24277 | Sbjct 1702396 C 1702396 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 1704272 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 1704331 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 1704332 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 1704377 >seq1453 Length=4135625 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| || ||||| ||||| || || | || || Sbjct 1830590 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 1830531 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1830530 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1830472 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 |||||||||||||| ||||||||||||||||||||||| || || | || |||||| Sbjct 1826285 AAATTTTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 1826226 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 24634 || || || |||| | | || || ||||| | | || ||| || |||| ||| || Sbjct 1826225 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 1826170 >seq5999 Length=11637418 Score = 96.9 bits (106), Expect = 4e-15 Identities = 239/358 (67%), Gaps = 11/358 (3%) Strand=Plus/Minus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 8324997 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 8324940 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | | |||||| | | |||| |||| | | || ||||| || |||| ||| ||| | || Sbjct 8324939 TCTATTTCTGGGTGAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 8324880 Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060 || | ||| | | ||| ||| ||||| || | || | |||||| ||||||||| Sbjct 8324879 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACAACCATTTCCTCTATAATCT 8324820 Query 22061 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 22117 || ||| | ||||| |||||| ||| || | |||| | || ||||| | ||| Sbjct 8324819 TCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 8324760 Query 22118 GCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAATTGT 22177 |||| ||| |||||||| ||| | | || ||| ||||| || | | | Sbjct 8324759 GCTACTCTCCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTCA--CAAGGG 8324702 Query 22178 CTTTCTCC--TGGAGGGATAGTATAATCATAAGCGCTATATAAATCATATCCGGCGGC 22233 |||||||| || || | || |||||||| || || |||| ||||| || ||||| Sbjct 8324701 CTTTCTCCATAGGTGGTACTGTGTAATCATAGGCACTGTATAGGTCATAGCCCGCGGC 8324644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593641625700480