Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1086 280 2e-70 seq2452 221 1e-52 seq4113 152 6e-32 seq6332 122 1e-22 seq2341 107 2e-18 seq8777 84.2 3e-11 >seq1086 Length=5827705 Score = 280 bits (310), Expect = 2e-70 Identities = 265/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||| || ||||| || ||||| | | | | |||| | ||||| ||||||||||||| Sbjct 1939743 AGCAGAGCTTCGATATCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGT 1939684 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 ||||| ||||| | ||||||| |||||| |||||||||||||| |||||||||||| Sbjct 1939683 ACGGGAACACCGTCTGGGCCCACCAGGAACTTTTCGAAGTTCCAGGCAACGTCGTTGCGG 1939624 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || |||||| ||| ||| | | |||||| || Sbjct 1939623 CACACCGGAGACCAGGTGATGAACTTGGGGTCTGTCATGAGGGCAGTGGCGTCGTCACTG 1939564 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| ||||| || |||||||||||||||||||| ||| | | || || ||| Sbjct 1939563 GGCGTGGGCAGAGCCTCCCGAAGGAAGGCGAAGAGCGGATGGGCCTTCTCGCCATTCACC 1939504 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| ||| || || || |||| ||| Sbjct 1939503 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCGCCGCCTGGTCGTACGTACTTG 1939444 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| ||| |||||||| Sbjct 1939443 AGGCAATTCAGGATCTCCTCGTTCTTGGCATTTTCCTG 1939406 Score = 183 bits (202), Expect = 4e-41 Identities = 167/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||| | | || |||| Sbjct 1939097 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCTGGGGCCCGAGGC 1939038 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| |||||||| || | |||||||| ||||| | Sbjct 1939037 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGGACAGTTGTGCCTCAGAGCGACGCCA 1938978 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||||| | | | || ||| |||| || || || |||| Sbjct 1938977 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGACCCCAAGTTCACGGGCTCCCCGCCGG 1938918 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || |||||||||||||| || Sbjct 1938917 CCAGCGGGCGCGCAGAGAAGGCGTACACCGA 1938887 >seq2452 Length=20022318 Score = 221 bits (244), Expect = 1e-52 Identities = 282/389 (72%), Gaps = 11/389 (3%) Strand=Plus/Minus Query 83158 CCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG 83217 ||||||||| || |||| ||||| ||||||||| |||| || ||||||| || ||| Sbjct 19381032 CCAGGCCACTTCTTTGCCACACACCAGAGACCAGGTGATGAACTTGGGGTCGGTCCTGAG 19380973 Query 83218 CGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATG 83277 | | | || | || |||| ||||| ||||| || ||||||||||||||||| | Sbjct 19380972 GGCAGTGGCGGCGACACTGGGCGTGGGCAGAGCCTCACGAAGGAAGGCGAAGAGCGGGTA 19380913 Query 83278 TGCCCTTGCACCGTTGACCTCGC--------ACTTCTCGAAGAGCATAAAGTTCGGCTCG 83329 ||| | || || ||||||| |||||||||||||||| ||||| |||||| Sbjct 19380912 CGCCTGCGAGCCATTCACCTCGCGCGTCTCCACTTCTCGAAGAGCATGAAGTTGGGCTCG 19380853 Query 83330 AAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTT 83389 || | ||| || || | ||||| ||| ||| || | ||||||| || ||||||||| Sbjct 19380852 AACCTGTTGCCTGGTCTGACGTACTTGAGGCAATTTAGGATCTCG---TTTTGGGCGTTT 19380796 Query 83390 TCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGG 83449 ||||| || || ||| |||| |||| ||| | ||||| ||||| || || | || ||| Sbjct 19380795 TCCTGATGCCCAAACCGGTTGCACGTGAAGCTGAGCACGACCAGGCCTCGGGGCCCGAGG 19380736 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 ||||| |||||| |||| ||| |||| ||| ||||| | |||| ||| || || Sbjct 19380735 AGCCGCCTCAGCTCCTTCACCTGGGTGTCGTCCTGGACCCCTGTGCCTCCGAGCGATGCC 19380676 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCG 83538 | || ||| ||||||| | ||| ||||| Sbjct 19380675 AAGTCCTCAATGAGCAGGGCCCTACCCCG 19380647 >seq4113 Length=38937830 Score = 152 bits (168), Expect = 6e-32 Identities = 241/344 (70%), Gaps = 5/344 (1%) Strand=Plus/Plus Query 83049 GCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT 83108 || |||| ||||||||||||||| | ||||| | | | |||||| | ||||| |||||| Sbjct 28676740 GCTGGGGCAGCAGGGCCTCGATGGCAGGCTCGAGGTCGAGGGTCAGAAAGCGGCGGCTGT 28676799 Query 83109 ACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGT 83168 || || || ||| | | ||| ||||||| || ||||| |||||||| || |||| Sbjct 28676800 ACGTGTGCGCGG-CACACTGTCCAGGCCCACCAGGAGCTTCTGGAAGTTCCGGGGGACGT 28676858 Query 83169 CGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGT 83228 || |||| ||| | ||||||||||| | ||||| ||||||| ||||||| | || Sbjct 28676859 CGCTGCGACACGCCGGAGACCAGGCGAGGAGCTCGGGGTCGGTCACGAGGGCAGGGGCGT 28676918 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 || | || |||| |||| ||||| | | |||||||||||| || ||| || | Sbjct 28676919 CGGCACTGGGCGTGCGCAGCGCCTCGC----GGAGGCGAAGAGCGAGTGCGCCTGCGCGC 28676974 Query 83289 CGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGA 83348 |||| ||| || ||| | |||| | | | ||||||| ||| | || |||| Sbjct 28676975 CGTTCCCCTTGCCCTTGGCCCGGAGCCTGAGCTCGGGCTCGAGCCCGCCGTCTGGTCGGA 28677034 Query 83349 CGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCC 83392 ||| | | ||| || |||||| | |||| ||| |||||| Sbjct 28677035 CGTACCTGAGGCCCTTCAGGATCTCCTCGTTCTTGGCATTTTCC 28677078 Score = 113 bits (124), Expect = 5e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCT-AGG 83449 |||| || | ||||| || | | |||| || ||| | ||||| ||| | || || ||| Sbjct 28677412 CCTGTTGCCTAAACTGCTTGCTCAGGAAGCCGAGCGCGACCAGGCCCGGGGCCCCCGAGG 28677471 Query 83450 ---CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGAC 83506 |||||||||||||| |||||||| |||| |||||| |||| | |||| ||| ||| Sbjct 28677472 TGCCGCCGCTGCAGCTCATTCATCTGGGTGTGGTCCCGGGCCGTCTTGCCTCCGAGCGAC 28677531 Query 83507 GCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCT 83566 || |||||||| |||||| || | |||| | | |||| | |||||| |||| || Sbjct 28677532 GCCACGTTCTCAGTGAGCAGCGCCTTGGCCCGCAGGGAGCCCAGGCTCACGAGTTCCCCA 28677591 Query 83567 CCGGTAATCGGGCGTGCTGAGAAGG 83591 |||| | |||||| || | | ||| Sbjct 28677592 CCGGCCAGCGGGCGCGCAGCGGAGG 28677616 >seq6332 Length=48489660 Score = 122 bits (134), Expect = 1e-22 Identities = 192/267 (72%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| || |||||| || || ||| Sbjct 3302032 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTTGCCTCACGCCTGC 3301974 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 ||||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 3301973 TCGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 3301914 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 3301913 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 3301855 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| |||| ||||| ||| || || ||||| |||| ||| ||||| ||| Sbjct 3301854 GTGCAGCTGCTCTACCCGCGGGCCAAGAATGACCGCGTCTGGA-CACTGGAGTTCGTGGG 3301796 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 3301795 CAAACTGGACGAGCGCTGCCGGCGCCG 3301769 >seq2341 Length=30371632 Score = 107 bits (118), Expect = 2e-18 Identities = 159/224 (71%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||| || | || |||||||| | || ||| | ||| ||||||||||| | |||| Sbjct 28027338 CAGGGCTTCAACGTTGGGCTCCATGTCCCTGGTTGGAAAGCAGTGGCTGTACCCGTGCAC 28027279 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 ||| || | ||||||| | ||||||| ||||||||||||||||| || ||| Sbjct 28027278 AGGCACATTGTTGGGGCCCACCAGGGACTTCTCCAAGTTCCAGGCCACGTCACGGCAGCA 28027219 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 | ||| || ||||| | | || |||| | ||| ||| | | || ||| | | Sbjct 28027218 CGCTGAAGGCCAGGTGAAGTTCTTGGGGCCAGTCATGAGTGCAGGGACGTTGTCATTGGA 28027159 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCC 83282 ||||||||| ||||| | | |||||| ||||||| ||||||| Sbjct 28027158 CGCCGGCAGAGCCTCAGGAAAGAAGGC-AAGAGCGAGTGTGCCC 28027116 >seq8777 Length=12443022 Score = 84.2 bits (92), Expect = 3e-11 Identities = 297/458 (65%), Gaps = 36/458 (8%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| || |||||||| || ||| ||| |||||| | || ||||| ||||||| Sbjct 3681123 GAACTTCTCTAACTTCCAGGCAACATCGCTGCAGCACACAG-AGCCCAGGTGATGAGCTT 3681065 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 || || | ||| || | ||| || ||| |||| ||||| | ||||| Sbjct 3681064 GGAATCTGTTGAAAGCA-GCGGTTATCGGCG---GGCTAGGGCAAGGCCTTCCACAGGAA 3681009 Query 83263 GGCGAAGAGCGGATGTGCCCTTGCA--CCGTTGACCTCGCACTTCTCGAAGAGCATAAAG 83320 |||| | ||| | |||| ||| || || | | | ||||||| ||| ||| | | Sbjct 3681008 GGCGCAAAGCAG--GTGCATCTGCGTGCCATTCATCACACACTTCTGGAAAAGCGTGA-- 3680953 Query 83321 TTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTC 83380 ||| | || | |||| |||||| || | |||| | | Sbjct 3680952 ------------------CCATCTCTGATGAGCTTGAGGGAATTCAGGCTCTCTTGGTAC 3680911 Query 83381 TGGGCGTTTTCCTGGTGACCG-AACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCG 83439 | || ||| ||||| || | | |||||||| | ||||| || ||||||||||| || | Sbjct 3680910 TTGGTGTTCTCCTGATGCCTGGAACTGGTTGCGTGGGAAGCCCAGCACTACCAGGCCTGG 3680851 Query 83440 AGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCA 83499 || || ||||||||| || ||||||||||||| | || | |||| | | || || Sbjct 3680850 GGCAA--AGTTGCCGCTGCACCTGGTTCATCTGAGTGCAGTCTCAGACCTTTGTGCCGCA 3680793 Query 83500 GAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGG 83559 ||| | || | ||||| ||||| | ||| ||| | | ||| | |||| |||| Sbjct 3680792 GAGCAATGCCGCTTTCTCAATGAGTAGCACCGTGCCAGGCTGGGTGCCCAGGCTCCCAGG 3680733 Query 83560 TTCTCCTCCGG--TAATCGGGCGTGCTGAGAAGGCGTA 83595 || ||| || ||| |||| | | ||||||| ||| Sbjct 3680732 CTC-CCTAAGGGCTAA-CGGGTGCACAGAGAAGGTGTA 3680697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608714795071040