Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq780 206 2e-48 seq2230 98.7 7e-16 >seq780 Length=6765806 Score = 206 bits (228), Expect = 2e-48 Identities = 510/771 (66%), Gaps = 7/771 (1%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 ||||||||||| |||||| || | |||| ||| || ||| ||| | || ||| Sbjct 32593 TAAACAGCCATTTCCATTTTAATAGTCGGGTGAGGATTGTAGCCTTCAATCTGAAAGTCT 32534 Query 96958 TTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGC 97017 | || || || |||||||| ||| |||| | | || | ||||||||| Sbjct 32533 TCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTCTGAGCTTGGGGAAAGGC 32474 Query 97018 CTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCA 97077 || || |||| |||||| | | || | ||||||||||||| |||||||| ||| Sbjct 32473 CTTGGTTCTCGCTGAAGCTGAATTTTCAGCGGCTCAATGTGATTCAGGTAAATGTGTGCA 32414 Query 97078 TCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAA 97137 ||||| |||||||| | ||| || || || | | ||||| || |||||||| Sbjct 32413 TCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGACGTGTGCGATCATG--- 32357 Query 97138 GTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTT 97197 || || | ||||| || ||||| || ||||| || || ||||| || |||| | Sbjct 32356 --TAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGTCTCCTGACATC 32299 Query 97198 TGATATAACTGACAGGAAAGCTTTCCAT-CACACACATAAAACTGACTCAATACATGACA 97256 || || | ||| ||||| |||| |||| ||| ||| || ||||| | | | || || Sbjct 32298 TGGTACAGCTGGCAGGACAGCTCACCATTCAC-CACGTAGAACTGGCAAAGGGCGTGGCA 32240 Query 97257 GGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCT 97316 ||||| | ||||| || | |||| |||||||||||||| | |||||||| Sbjct 32239 CGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCT 32180 Query 97317 ATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCC 97376 ||| ||||| || | || || | | | | | | | |||||| || |||| | Sbjct 32179 GTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTACTCCTTGATC 32120 Query 97377 ACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATA 97436 ||||| | | | ||| ||||| || |||||||||||||| || || ||||| Sbjct 32119 TGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATA 32060 Query 97437 AACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCT 97496 ||| || || | || |||||| |||| |||| || || | || || || | Sbjct 32059 AACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCG 32000 Query 97497 AGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGA 97556 || ||||| |||||||| || | ||| || | | ||||| || || || || Sbjct 31999 GGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGA 31940 Query 97557 TCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGT 97616 ||| |||||||||||| ||| || ||| |||||| | || || || | || ||||| Sbjct 31939 TCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACGTTTGGTTGT 31880 Query 97617 TAAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCATTCCAAAAAC 97667 | |||||||| || | | | |||||| | | |||||| || || || Sbjct 31879 CAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACAC 31829 >seq2230 Length=20112346 Score = 98.7 bits (108), Expect = 7e-16 Identities = 307/467 (66%), Gaps = 14/467 (3%) Strand=Plus/Plus Query 97007 TTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAG-AGCATCAATGTGATTCACA 97065 ||||||||||||| || || | ||||||| | | || ||| |||||||||| || Sbjct 11223114 TTGGGAAAGGCCTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGC-TCAATGTGATCCAGG 11223172 Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 |||||||| |||||||| |||||||| | | | || || || | | |||| || Sbjct 11223173 TAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGT 11223232 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 |||||||| | || | || | |||||| || | ||| || | ||| || || ||| | Sbjct 11223233 GCGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTG 11223292 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCT-TTCCATCACACACATAAAACTGACT 97244 || |||| || || || | ||| ||||| |||| | |||| ||| || || || | Sbjct 11223293 TCTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCATGGTTCAC-CACGTAGAAGTGGCA 11223350 Query 97245 CAATACATGACAGGGGGGCA-------ACGCCATTTTTGGAACATCTAAGACATTCCAAG 97297 | |||| || |||||| | | || |||| |||| |||||||| Sbjct 11223351 AAGGGCATGGCACAGGGGCAGGGTGGCAGGGTATGAGAGGAAGATCT-TTTGATTCCAAG 11223409 Query 97298 CACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTA 97357 |||| | | |||||||| || ||||| || | || || | ||| | || | | Sbjct 11223410 CACATAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCACCTTTTGCA 11223469 Query 97358 ATTGATCAACGCCTTCTCCACCATA-ATTGTGCTTAAGACCTTGATATTCTGCTCCAAAA 97416 ||| || || |||| | ||| ||| | | | ||| ||||| || | ||| Sbjct 11223470 GTTGGTCTACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAA 11223529 Query 97417 TGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCT 97463 ||||||| || || | |||||| || || | || ||||||||||| Sbjct 11223530 GGCCTCCACTGAAAGCTATAAACTGGGCCTAAATCCCCTTCTTCTCT 11223576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346738455990320