Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq8555 89.7 8e-13 seq3672 84.2 3e-11 >seq8555 Length=10321147 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 2780806 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 2780864 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| |||| ||| ||||| ||||| |||| ||||||||| || ||||| Sbjct 2780865 CAAAGTACGTCCATCTTCTAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCAGGAGG 2780924 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || || || Sbjct 2780925 AATTCCTTCCTTGTCCTG 2780942 >seq3672 Length=15443579 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| | || ||| || || || || || || Sbjct 13644567 CCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGA-ATGTTGTAGTCAGA 13644509 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| ||||||||||| |||| ||||||||| || ||||| Sbjct 13644508 CAAAGTACGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 13644449 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || || || Sbjct 13644448 AATTCCTTCCTTGTCCTG 13644431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743426246993920