Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1386 212 6e-50 seq7110 203 3e-47 seq8888 104 2e-17 seq1453 102 8e-17 >seq1386 Length=4420875 Score = 212 bits (234), Expect = 6e-50 Identities = 529/804 (66%), Gaps = 47/804 (6%) Strand=Plus/Plus Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 |||| |||| || | ||| || ||||| ||||| || ||||| ||||| ||| || Sbjct 837325 CCCAGCTCCAGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 837384 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 ||||| || || | || || || | || || || | || | | |||||| |||| Sbjct 837385 TTCATCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATTCTAACT 837444 Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT---TAATAAGTGTTTA 16225 || | | |||||| | | | ||| || | || ||| || || | |||||| Sbjct 837445 GCATTGACGATTATTTATTTGACT---CTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 837501 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 ||||| | || ||||| ||||| || || || ||||| || || || | || || ||| Sbjct 837502 AACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 837561 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 ||||| || || ||||| || ||||||||||| | ||| ||||| | ||||| |||||| Sbjct 837562 AATGTGAGGCCGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCA 837621 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC-GTACGTT----- 16399 |||||||| || ||||| ||||| ||||| || || || || || || |||||| Sbjct 837622 GAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGA 837681 Query 16400 -CTAt--ttttacttt-------------ctatccattttt-----------------ta 16426 | || |||| || | || | | ||| Sbjct 837682 ACAATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAG 837741 Query 16427 gcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAttt 16486 ||||||| ||| || | || ||||| ||| |||| || || || || | | | | Sbjct 837742 GCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCC 837801 Query 16487 ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 |||||||| |||| ||| ||||| || || || | |||||||||||| ||||| || Sbjct 837802 CTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATG 837861 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAG 16606 || ||||| || || | || ||||| || || | ||||| | || || ||||| | Sbjct 837862 TTTTCCATGGCAATTAGGAAGCCATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTGG 837921 Query 16607 TAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGT 16666 |||| | | |||||||| || ||||| ||||| || |||||||| || || || Sbjct 837922 CTAAACTGCTAAACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGA 837981 Query 16667 ATGTGTTTAATAAAAtttttttCGTTA-TCTGAAAGTTTTAACCAGTCAGAAAAATCTTT 16725 | || ||| |||| | | || | | || | | || ||||| || || || Sbjct 837982 ACATGCAAAATGAAATATCTCTCCTCAGGCTTCAGGGCTT-CCCAGTGCTGAATGTCCTT 838040 Query 16726 TGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCA 16785 || | || |||||||| | |||||||| ||||| |||| || |||||||| | ||| Sbjct 838041 GGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCA 838100 Query 16786 TATGTCTTCGTAAACAATAGGAAA 16809 || || | ||| | |||||||| Sbjct 838101 AATATCATGGTATTCGATAGGAAA 838124 >seq7110 Length=16720443 Score = 203 bits (224), Expect = 3e-47 Identities = 514/781 (66%), Gaps = 52/781 (7%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| ||| ||| | ||||| || | |||||||| ||| |||| || || || ||| Sbjct 13122559 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 13122500 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC-- 16046 || | ||||||||| |||||||| ||||| ||||||| | || | | | | || Sbjct 13122499 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCT--ACTCT-GAAAACCTTGCTA 13122443 Query 16047 -ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | |||| ||| || | ||| || ||||| ||||| || ||||| ||||| ||| Sbjct 13122442 AAACCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTG 13122383 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 || ||||| || || | || || | | || || || | || | | |||||| || Sbjct 13122382 CAATTCATCCCAATGAGCTTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTA 13122323 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT---TAATAAGTGT 16222 || || | | |||||| | | | ||| || | || ||| || || | |||| Sbjct 13122322 ACTGCATTGACGATTATTTATTTGACT---CTCTGCTCCGAAGGTTTGTGTAGCAGGTGT 13122266 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 || ||||| | || ||||| ||||| || || || ||||| || || || | || || Sbjct 13122265 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTG 13122206 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 |||||||| || || ||||| ||||||||||| || | ||| ||||| | ||||| ||| Sbjct 13122205 GAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAA 13122146 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC-GTACGTT-- 16399 ||||||||||| || ||||| ||||| ||||| || || || || || || |||||| Sbjct 13122145 CCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGG 13122086 Query 16400 ----CTAt--ttttacttt-------------ctatccattttt---------------- 16424 | || |||| || | || | | ||| Sbjct 13122085 AGAACAATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCAC 13122026 Query 16425 -tagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAA 16483 ||||||| ||| || | || ||||| ||| |||| || || || || | | | Sbjct 13122025 AAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAAT 13121966 Query 16484 tttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGA 16543 | |||||||| |||| ||| ||||| || || || | |||||||||||| ||||| Sbjct 13121965 TCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGT 13121906 Query 16544 ATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA 16603 || || ||||| || || || || ||||| || | ||||| | || || ||||| Sbjct 13121905 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCT 13121846 Query 16604 GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA-AAAAACGC 16662 | || || || | | |||||| || |||| || || || |||||| | ||| || Sbjct 13121845 TGGCTAAGCCACTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGC 13121786 Query 16663 A 16663 | Sbjct 13121785 A 13121785 >seq8888 Length=9016713 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | || || |||||||| || || ||||| || ||||||||||| Sbjct 1702278 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 1702337 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 1702338 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 1702397 Query 16379 AC 16380 || Sbjct 1702398 AC 1702399 >seq1453 Length=4135625 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||||| | || ||||||||| | | | | |||||||| | Sbjct 1844863 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 1844804 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| || ||||| ||||| |||| Sbjct 1844803 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 1844744 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 1844743 CCATAAAATCAAAGGGATTTTCTG 1844720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462449699633600