Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq897 2006 0.0 >seq897 Length=37111980 Score = 2006 bits (2224), Expect = 0.0 Identities = 1481/1730 (86%), Gaps = 49/1730 (3%) Strand=Plus/Plus Query 107068 CCAG-TCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGT 107126 |||| |||| | ||| ||||||| || |||||||||| || |||||||| ||| | Sbjct 28905310 CCAGATCCTGATCCCAACCCCAGCACGATCAGCTGGTTTGTAGTGTCAGGTTATAGACCT 28905369 Query 107127 CCATCCACAAG-------------GGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTA 107173 ||||| || | || ||||||||||||||||||||||||||||||| Sbjct 28905370 CCATCAGTGAGCTGGGTGTGTGAAGTTCCTAGGCAGGACTTGACTGAGGATATTTGTCTA 28905429 Query 107174 TAGAAGACATCTATCTTTACCATCACTCTGGAGTTGAACTTGATGTTC--------TG-- 107223 |||||| | |||| ||| |||||||| ||||||||||||||||| | || Sbjct 28905430 GAGAAGAAACCTATTTTTGCCATCACTTCGGAGTTGAACTTGATGTACCTTGAGCATGTT 28905489 Query 107224 ---GATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTC---CTCCTCCACC 107277 | ||||||||||| | ||||||||||||||||||||||||| || ||||||| || Sbjct 28905490 CCAGGTTAGTTTGTAACTGAAGGCATTTTGTTCTGTCCAAGGATTTCATCCTCCTCCTCC 28905549 Query 107278 TTGCCTGTGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGA 107337 || |||||||||||||||||| | |||||||| ||||||||||| | ||||| ||||| Sbjct 28905550 TTCCCTGTGCCCAAACTCTCCCGGTCTCCCATTCCATGAAGATGATTAAGTGGAGGAAGA 28905609 Query 107338 AGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTT 107397 | || ||| |||| ||||| ||||||||||||||||||||||||||||||||| | ||| Sbjct 28905610 AACTCTGCAGGGGGCATCACCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCATCGTTG 28905669 Query 107398 CTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGG 107457 |||||| |||||| |||||||| |||||||| |||||||| |||||||||| ||||||| Sbjct 28905670 CTCTGAAACTTTCTCTCAGGTTAAAATGTGACATAGATTCCCTGGATCTGGAATCCAGGG 28905729 Query 107458 ACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGA 107517 |||||| || |||| |||||||||||| |||||||| |||||||||||||||||||| Sbjct 28905730 ACTTCCGAAGCCAGCGCTGTAGGGACATCTTGTACAAGTCCCTGAAGCTGCCAGCAAAGA 28905789 Query 107518 GATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCC 107577 ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| Sbjct 28905790 GATCCATCAACTGTTCTGGGATCACCCGAGGGGACCAGGAAGCAGTGGTCAAGGCTCTCC 28905849 Query 107578 TAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACA 107637 | ||||| |||||||| ||||| |||||| |||| |||| | |||| |||||||||||| Sbjct 28905850 TGGACAATCTGGAAGTCAAGAAGAAGCGGGAGCCTTTCACAGACACCGATTACCTCAACA 28905909 Query 107638 TAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTA 107697 | |||||||||||||||| || || |||| ||||||||||| |||||||||||||| | Sbjct 28905910 TGACCAGAGACTGTGAGCAGTTTAAATCCCAGAGGAAGTTCATCCAGTTCCCACTGAGCA 28905969 Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 ||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 28905970 GAGAAGAGTTAGACTTCCCCATCGCCTACTCTGTGGTGGTCCATGAGAAGATTGAAAACT 28906029 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 | ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| Sbjct 28906030 TCGAACGGCTGCTGCGAGCTGTGTATGCCCCTCAGAACATATACTGCGTCCATGTGGATG 28906089 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 |||||||||||| |||||||||||||| ||||||||||| |||||||||||||| || | Sbjct 28906090 AGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAAGGCCATCATTTCCTGCTTCCCAAACG 28906149 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||| Sbjct 28906150 TCTTCATGGCCAGTAAGTTGGTCCGGGTGGTTTACGCCTCCTGGTCCAGGGTGCAGGCTG 28906209 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATA 107997 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 28906210 ACCTGAACTGTATGGAAGACTTGCTCCGGAGCTCAGTGCCATGGAAATACTTACTGAATA 28906269 Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057 | || |||||||| || || |||||||||||||| ||||||||||||||||||||||||| Sbjct 28906270 CGTGTGGGACAGATTTTCCTATAAAGACCAATGCTGAGATGGTCCTGGCCCTCAAGATGT 28906329 Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117 |||| || ||||||||||||||||| ||| ||||| |||||| |||||| |||||||| Sbjct 28906330 TGAATGGGAAGAACAGTATGGAGTCCGAGATACCTACTGAGTACAAAAAGTCTCGCTGGA 28906389 Query 108118 AATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCC 108177 |||||| ||||||||||||||||||| || ||| ||||||||||||||||||||||||| Sbjct 28906390 AATACCACTATGAGGTGACAGACACATTGCACCTAACCAGCAAGATGAAGGACCCTCCCC 28906449 Query 108178 CTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCC 108237 ||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 28906450 CTGATAACTTACCTGTGTTCACGGGGAATGCCTATTTTGTGGCTTCTCGAGCCTTTGTCC 28906509 Query 108238 AACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATA 108297 ||||||||||||| ||||| ||||||||||||||| | ||||||| ||||||||||||| Sbjct 28906510 AACATGTCTTAGAGAACCCCAAATCCCAAAGACTGATCGAATGGGCAAAAGACACCTATA 28906569 Query 108298 GCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTC 108357 |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 28906570 GCCCGGATGAACACCTCTGGGCCACCCTTCAGCGTGCACCGTGGATGCCTGGCTCTGTCC 28906629 Query 108358 CTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGC 108417 | ||||||||||| |||||||||||||||||| ||||| |||||||| ||||| |||| Sbjct 28906630 CCTACCACCCCAAGTTTCACATCTCAGACATGACCGCCATTGCCAGGCTGGTCAAATGGC 28906689 Query 108418 AGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATC 108477 || ||| |||||||| || | |||||||| ||||||||||| |||||||||||||| | Sbjct 28906690 AGCTCCATGAGGGAGACATCGGTATGGGGGCACCTTATGCACCTTGCTCTGGAATCCACC 28906749 Query 108478 GGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACC 108537 | |||| ||||||||||| ||||| ||||||||| |||||||||| ||||| ||||||| Sbjct 28906750 AGCGGGCTATCTGCATTTATGGGGCTGGGGACCTGCACTGGATTCTTCAGAATCATCACC 28906809 Query 108538 TCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGT 108597 ||||||| |||||||||||||| | |||||| |||||||| ||||||||||||||||||| Sbjct 28906810 TCTTGGCGAACAAGTTTGACCCAAAGGTGGACGATAACGTTCTGCAGTGCTTAGAAGAGT 28906869 Query 108598 ACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG----------------CTGCA 108641 | ||||| ||||||||||||||||||||||||| |||| |||| Sbjct 28906870 ATTTACGTTATAAGGCCATCTATGGGACTGAACTCTGAGAAACACCGTGAGAGGATTGCA 28906929 Query 108642 --CTGTGGGCCAGGGAC-TGTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGG 108698 | | ||| |||| || ||| | ||| |||| || | |||| || ||||||||||| Sbjct 28906930 ACCCGAGGGGCAGGAACATGTACAAACGTGCCTAGAACACGCTGGGACAGTGTGGGGTGG 28906989 Query 108699 GGGACGAGGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 | ||| |||||| ||||||||||||| |||||| ||||||| |||||||| Sbjct 28906990 GAGACCAGGGCTCTGGAATCCATGGCCTCCCCCTGGGTCAGGGGGCTGCT 28907039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348223060987824