Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq780 275 5e-69 seq2230 176 4e-39 >seq780 Length=6765806 Score = 275 bits (304), Expect = 5e-69 Identities = 539/797 (68%), Gaps = 5/797 (1%) Strand=Plus/Plus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037 || || || || || || || | || || || || ||||| | || || | | ||||| Sbjct 31802 GACCGCACAGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCTACAGCCTGAGA 31861 Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 |||||||||| | | || || ||||| || || || || || ||| || ||||| Sbjct 31862 GATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGCAAGGGTGTTTCGGAGGAGTTG 31921 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 | |||||||| || ||||| ||||| ||| ||||| || ||||| || || Sbjct 31922 CTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATC 31981 Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217 ||| || |||| || | || || ||||| ||||| || | | ||| Sbjct 31982 TGGGATGCCAATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGCAGAA 32041 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 |||||||| || || || ||||| ||||| ||||| |||||||| || ||||| || Sbjct 32042 GGGGATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCCGAATACAAAGAT 32101 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||| | || |||||| | ||||||||||||||| | ||||| || | | | ||| Sbjct 32102 ATGGATTCAGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTGACTGACACAATC 32161 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||||| ||||| ||||||||||||| || | || || ||||| | |||||| | ||| Sbjct 32162 AAAACCAACCCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCCT 32221 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 | ||||| | || || || || || ||||| || ||||| | ||| ||| || Sbjct 32222 CTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTGAATGGTGAGCTG 32281 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || || || |||| || || | || ||||| |||||||| || ||||| || || Sbjct 32282 TCCTGCCAGCTGTACCAGATGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAACATCGCC 32341 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 || || || |||| || ||||| ||||| || || | | || | |||||||| Sbjct 32342 AGCTACGCCCTGC-----TACATGATCGCACACGTCACGGGCCTGAAGCCAGGTGACTTT 32396 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAG 20637 || ||||| | ||||| || || |||||||| ||||| || || || | ||| | ||| Sbjct 32397 GTACACACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCCGCTGAAAATTCAG 32456 Query 20638 TTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATT 20697 | ||| |||||| | ||||| | || | || ||||| ||| | | ||| Sbjct 32457 CTTCAGCGAGAACCAAGGCCTTTCCCCAAGCTCAGAATCCTTCGAAAAGTTGAGAAAATT 32516 Query 20698 AACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCA 20757 | || || || ||||| || ||| | | ||||| || ||||| || | ||| | Sbjct 32517 GATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCACCCGACTATTAAA 32576 Query 20758 ATGGAAATGTCTGTTTA 20774 ||||||||| ||||||| Sbjct 32577 ATGGAAATGGCTGTTTA 32593 >seq2230 Length=20112346 Score = 176 bits (194), Expect = 4e-39 Identities = 383/570 (67%), Gaps = 10/570 (2%) Strand=Plus/Minus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| |||||||| || || || ||| | ||||| ||||| | ||| | |||||||| Sbjct 11223572 AAGAAGGGGATTTAGGCCCAGTTTATAGCTTTCAGTGGAGGCCTTTGGTGGCTGAATACA 11223513 Query 20273 TTGACATGAACACAAAT-TATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAAT 20331 || || | |||| |||| | ||||||||||| ||| | ||||| || ||| | Sbjct 11223512 AAGATGTGGATTTAAATGTATTCACGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGAC 11223453 Query 20332 TTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGAT 20391 ||| ||||| ||||| | ||||||||||| ||| |||| || ||||| | |||||| Sbjct 11223452 ACAATCAAAACCAACCCTGAAGACAGAAGAATCATTCTATGTGCTTGGAA-TCAAAAGAT 11223394 Query 20392 GTGCCTTTAATGGCTT-------TGCCTCCATGTCATATGCTATGCCAATTTTACGTTGC 20444 | ||| | || | | |||| | || ||| || ||||| || ||||| | Sbjct 11223393 CTTCCTCTCATACCCTGCCACCCTGCCCCTGTGCCATGCCCTTTGCCACTTCTACGTGGT 11223334 Query 20445 TAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCC 20504 || |||| |||| || || |||| || | || | || | ||| |||||||| | Sbjct 11223333 GAACCATGAGCTGTCCTG-CAGCTGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTC 11223275 Query 20505 TTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 ||||| | || || ||||| ||||| || || ||||| ||||| | |||| | || Sbjct 11223274 CTTCAACGTCGCCAGCTATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAA 11223215 Query 20565 AACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACC 20624 | ||||||| || ||||| | ||||| || || |||||||| |||| || || | Sbjct 11223214 GCCAGGTGACTCTGTACACACTTTGGGAGATGCACACATTTACCTGGATCACATTGAGCT 11223155 Query 20625 TTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAAC 20684 | ||| | ||| | || |||||| | ||||||| || || | ||| Sbjct 11223154 GCTGAAAATGCAGCTTCAGGGAGAACCAAGGCCTTTCCCAAAGCTCAAAATCCTTGGAAA 11223095 Query 20685 TGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCA 20744 ||| | | || | || || || ||||| || ||| | | ||||| || | |||||| Sbjct 11223094 AGTTGAGAAAATCTATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCA 11223035 Query 20745 TAATTCAATTCCAATGGAAATGTCTGTTTA 20774 | | ||| |||||||||| ||||||| Sbjct 11223034 TCCCACTATTAAAATGGAAATGGCTGTTTA 11223005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399131574167320