Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1386 230 2e-55 seq7110 194 2e-44 seq8888 120 3e-22 >seq1386 Length=4420875 Score = 230 bits (254), Expect = 2e-55 Identities = 455/675 (67%), Gaps = 45/675 (7%) Strand=Plus/Plus Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 || ||||| || || | || ||||| ||||| || | ||||| ||||| ||||||||| Sbjct 837493 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGT 837552 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 || || |||||||| | || ||||||| ||||||||||| | ||| ||||| | || Sbjct 837553 TCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCA 837612 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCA--- 14362 || || || |||||||| ||||| || ||||||||||| |||| || ||||||||| Sbjct 837613 AAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTA 837672 Query 14363 --------AACGATGCTTTTTTGTTCGATATCCAT-------------TT--------TC 14393 ||| |||| || ||| || | | || || || Sbjct 837673 CGTTGGAGAACAATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATC 837732 Query 14394 TAGC-------CCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 ||| ||| || | || || || | | || |||||| |||||||| || || Sbjct 837733 CAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAG 837792 Query 14447 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506 | | |||| | ||||| | | | |||||| || ||||| || | |||||||||||| Sbjct 837793 AGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCA 837852 Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566 || || ||||||||||| || || | || ||||| ||||| | ||||| | || Sbjct 837853 GAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACAGGCTTCCGTAATCTGA 837912 Query 14567 ACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14626 || ||| | ||| | |||| |||||||| ||||| |||||||| |||||||| Sbjct 837913 ACTTCTTGGCTAAACTGCTAAACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAG 837972 Query 14627 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCT 14686 || |||| | | ||| || ||| ||| ||| | || || ||| | ||| Sbjct 837973 AAAGCCAGAACATGCAAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGT--GCT 838030 Query 14687 AAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTAT 14744 || ||||| ||||| || || || ||| |||||||||| ||| ||||||| |||| Sbjct 838031 GAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTAT 838090 Query 14745 ACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATG-TTTCT 14803 |||| ||| || || | ||| |||||||| | ||||| | | | || ||||| Sbjct 838091 ACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAAGC-GGCGGGTGTTTTCT 838149 Query 14804 TTAAGAATTGGTTCC 14818 || |||| ||||||| Sbjct 838150 TTCAGAAGTGGTTCC 838164 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 837127 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 837186 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| ||||| ||||| || |||||||||||| Sbjct 837187 TCCAGTGAAATATTCTCCATGAAGTCAAATGGATTT 837222 >seq7110 Length=16720443 Score = 194 bits (214), Expect = 2e-44 Identities = 503/769 (65%), Gaps = 47/769 (6%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || ||| |||||||||| || ||| Sbjct 13122559 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 13122500 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 |||||||| ||||| |||||||| |||||||||||| | | || || || | || Sbjct 13122499 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 13122440 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 || || || | | ||| || || | ||| || || || || ||| ||| ||| Sbjct 13122439 CCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 13122380 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 ||||| || || || || || | | | || | || || | |||||| || Sbjct 13122379 TTCATCCCAATGAGCTTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 13122320 Query 14138 GCCT---CGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTA 14194 || | || |||| || | | | | | | ||||| | | || ||||| Sbjct 13122319 GCATTGACGATTATT-TATTTG--ACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 13122263 Query 14195 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 14254 || || | || ||||| ||||| || | ||||| ||||| ||||||||||| || ||| Sbjct 13122262 AACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 13122203 Query 14255 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 14314 ||||| | || ||||||| ||||||||| || | ||| ||||| | || || || || Sbjct 13122202 AATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCA 13122143 Query 14315 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCA-----------A 14363 |||||||| ||||| || ||||||||||| |||| || ||||||||| | Sbjct 13122142 GAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGA 13122083 Query 14364 ACGATGCTTTTTTGTTCGATATCCAT------------TTTCT----------------A 14395 || |||| || ||| || | | || ||| | Sbjct 13122082 ACAATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAG 13122023 Query 14396 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCC 14455 ||||| || | || || || | | || |||||| ||||| || || || | | |||| Sbjct 13122022 GCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCC 13121963 Query 14456 TTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14514 | ||||| | | |||| |||||| || ||||| || | ||||||||||| || ||||| Sbjct 13121962 CTTTCTTTGGAATCTTG-AATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTAT 13121904 Query 14515 GTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGA 14574 ||||||||| || || || || ||||| ||| | ||||| | || || ||| Sbjct 13121903 GTTTTCCATGGCAATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTG 13121844 Query 14575 GTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14623 | || | || ||| |||||||| |||| || ||||| |||||| Sbjct 13121843 GCTAAGCCACTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCA 13121795 >seq8888 Length=9016713 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| ||||||||||| || |||||||| | || ||||||| |||||||||| Sbjct 1702276 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 1702335 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| || ||||||||||| | Sbjct 1702336 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 1702395 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 1702396 CTACGACACGTTCTCC 1702411 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 1700559 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 1700618 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| ||||| ||||| || |||||||||||| Sbjct 1700619 TCCAGTGAAATATTCTCCATGAAGTCAAATGGATTT 1700654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482280628047680