Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1386 156 4e-33 seq3672 105 6e-18 seq7110 100 3e-16 seq5888 98.7 9e-16 seq2941 98.7 9e-16 seq920 96.9 3e-15 seq7443 91.5 1e-13 seq4888 86.0 6e-12 seq8555 84.2 2e-11 seq4777 82.4 7e-11 >seq1386 Length=4420875 Score = 156 bits (172), Expect = 4e-33 Identities = 544/847 (64%), Gaps = 53/847 (6%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || ||||||||| || |||| || |||| | |||||||| ||||| || ||||| | Sbjct 838166 GAGGAACCACTTCTGAAAGAAAACACCCGCCGCTTTGTCATCTTTCCTATCGAATACCAT 838107 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| | ||||| || || || || || || |||||||| | ||||| || ||| Sbjct 838106 GATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGAC 838047 Query 57627 CTGTCTAAGGATCTG-AGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 || || ||||| | ||| | ||||| |||| || |||||| |||| ||| Sbjct 838046 CTTTCCAAGGACATTCAGC-ACTGGGAAGCCCTGAAGCCTGAGGAGAGATATTTCATTTT 837988 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 || || |||| || || || ||| ||||| || || || || || ||||| | Sbjct 837987 GCATGTTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTTTAGCA 837928 Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 ||| |||||||| || | ||||| || | || || || || || | | | ||||| Sbjct 837927 GTTTAGCCAAGAAGTTCAGATTACGGAAGCCTGTTGTTTCTATGGCTTCCTAATTGCCAT 837868 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 |||||| | ||||| ||||||||| || ||||| || || ||| | || || | | Sbjct 837867 GGAAAACATCCATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGATTCCAA 837808 Query 57866 CGAGAAACGTAGA--CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCA 57923 ||||| | | || |||||||| || || |||||||| | ||||||||| Sbjct 837807 --AGAAAGGGAATTTCTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGGCA 837750 Query 57924 GAGTGGTCAATCAAATGGAT-------AAAAAG---------------------CGCCAC 57955 || ||| | | ||||| ||| || || | Sbjct 837749 GATTGGGCCTTGTGCTGGATCGGGGACAAAGAGGCATTGTCCATTGTTCTCCAACGTAAT 837690 Query 57956 GGCCACGTTCGCC---------GAGA--GGCTAATCGCGTTCGCCGCCGTCGAAGGTATA 58004 ||| |||| || |||| | | | || || || || || ||||| || Sbjct 837689 GGCATTGTTCTCCAACGTAATGGAGAACGTTTCGTAGCCTTTGCTGCAGTGGAAGGAATC 837630 Query 58005 TTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGC 58064 |||||||| || ||||| | ||||| ||| | || ||||| || |||||||||||| Sbjct 837629 TTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAAAAACGAGGTCTGATGCCCGGC 837570 Query 58065 CTGACGTTTAGCAACGAGTTGATATCGC-GCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 || || ||| ||| || | || | || | ||||||||| | || ||| ||||| || Sbjct 837569 CTCACATTTTCCAATGAACTTAT-TAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTG 837511 Query 58124 CCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCAC 58183 ||| |||| | ||| | | | ||||| || | | | || | || ||| Sbjct 837510 CCTGATGTTCAAACACCTGCTACACAAACCTTCGGAGCAGAGAGTCAAATAAATAATCGT 837451 Query 58184 CGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTC-- 58241 | | || || || ||| | ||||| |||| || ||||| || ||| | |||| Sbjct 837450 CAATGCAGTTAGAATAGAACAGGAGTTCCTCACGGAGGCCCTGCCAGTG---AAGCTCAT 837394 Query 58242 -GGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300 || ||||| ||||||| ||||||| || || || || ||||||||| |||| Sbjct 837393 TGGGATGAATTGCACTTTGATGAAGCAGTACATCGAATTCGTGGCAGACAGACTTATGCT 837334 Query 58301 CGAACTG 58307 || ||| Sbjct 837333 GGAGCTG 837327 >seq3672 Length=15443579 Score = 105 bits (116), Expect = 6e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| |||||||| || || ||||| |||| || ||||| Sbjct 13644338 AATATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCC 13644397 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || |||||||||||| | || || ||| Sbjct 13644398 TCGGATACAATAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 13644457 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || ||||| || || ||||||| | | | ||| || || || Sbjct 13644458 CAGCAAAGACTGATCTTTGCTGGAAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 13644516 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || | ||||||||||| || | ||||| Sbjct 13644517 CAACATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAGACT 13644558 >seq7110 Length=16720443 Score = 100 bits (110), Expect = 3e-16 Identities = 289/437 (66%), Gaps = 12/437 (3%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || || || || ||||| || |||||||| || ||||| | ||||| ||| | Sbjct 13122111 GCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTC 13122170 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC-GCGACGA 58099 |||||||| || |||||||||||||| || ||| ||| || | || | || | ||||| Sbjct 13122171 AAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTAT-TAGCAGAGACGA 13122229 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCG 58159 |||| | || ||| ||||| ||||| |||| | ||| | | | ||||| || Sbjct 13122230 GGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCTGCTACACAAACCTTCGGA 13122289 Query 58160 GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219 | | | || | || ||| | | || || ||| ||| | ||||| |||| || Sbjct 13122290 GCAGAGAGTCAAATAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGA 13122349 Query 58220 AGCCCTACCGGTGGCCATGCTC---GGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 ||||| | ||| | |||| || ||||| ||||||| ||||||| || Sbjct 13122350 GGCCCTGACAGTG---AAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATCGA 13122406 Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACT-GATTGGAG-AGCGTCATTACAACACGAAA 58334 || || || ||||||||| ||| || || | || || | || || || || Sbjct 13122407 ATTCGTGGCAGACAGACTTATGCGGGAGCTGGGTTTTAGCAAGGT--TTTCAGAGTAGAA 13122464 Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaa 58394 ||||| ||||| |||||| | || || || || || ||||| ||||| | || || Sbjct 13122465 AATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTCTGAGAAG 13122524 Query 58395 aaaGTTAGCGAATATCA 58411 | ||| |||| ||||| Sbjct 13122525 AGAGTAGGCGAGTATCA 13122541 >seq5888 Length=21378709 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| | ||||| |||||||| | | ||||| |||| |||||||| Sbjct 13336092 AATATGCAGATTTTCTTGAAGACCCTGACAGGGATGGCCATCACTCTCGAGGTTGAACCC 13336033 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCG 31307 || || | |||| ||| | || ||| |||||||||||| | || || | Sbjct 13336032 TCGGATGCAATAGAAAAATGTAAAG-GCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTG 13335974 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366 ||||||| || || || |||||||| || ||||||| | | | ||| || || Sbjct 13335973 ACCAGCAAACACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGAC 13335915 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||||||||| || || ||||||||||| ||| | ||||| Sbjct 13335914 TACAACATTCAAAAGGAGTCTACTCTTCATCTTGTAGTGAGACT 13335871 >seq2941 Length=1025224 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| |||||| | ||||| |||||||| || || ||||| || | |||||||| | | Sbjct 785722 TGCAGATTTTCATGAAGACCCTGACAGG-AAGACCATCACTCTCAAGGTTGAACCCTTGG 785780 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 | | | |||| || || | || |||||||||||| | | || ||||||| Sbjct 785781 ATACAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGC 785840 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAAC 31372 | | || || || |||||||| || ||||||| | | | ||| || || || ||| Sbjct 785841 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTACAAC 785899 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || ||||||||||| ||| | ||||| Sbjct 785900 ATTCAAAAGGAGTCCACTCTTCATCTTGTAGTGAGACT 785937 >seq920 Length=9572204 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || ||||| | || || ||||| Sbjct 2426626 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCC 2426567 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| || || | || |||||||||||| | || || ||| Sbjct 2426566 TCAGATGCAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 2426507 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || || ||||| || ||||||| | | | ||| || || || Sbjct 2426506 CAGCAAAGACTGATCTTTGCAGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 2426448 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 2426447 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 2426406 >seq7443 Length=30544692 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 5028938 ATGCAGATCTTCGGGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 5028997 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC--GACC 31310 |||| || | | || || | || ||| ||||||||| | || ||| |||| Sbjct 5028998 GACACCATCAAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCCCCGACC 5029057 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || || || || ||||||||| |||||||| ||||| ||||| | Sbjct 5029058 AGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCCGCACTATTTCTGATTACA 5029117 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || ||||| || || || || ||||| || | || ||||| || Sbjct 5029118 ACATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTAAGGGGTGG 5029166 >seq4888 Length=12843668 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || ||||| |||| || ||||| Sbjct 850329 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 850388 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCG--GACAAGGAAGGCGTGCCGCCCG 31307 | || | |||| || |||| | || | | || |||||||| | || || | Sbjct 850389 TTGGATACAACAGAAAATGT-AAAC-GCCAAGATCCACGATAAGGAAGGAATTCCTCCTG 850446 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| | || || || |||||||| || |||||||| ||| || || Sbjct 850447 ACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGACGGACGTACTTTGTCTGACC 850506 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 | |||| |||||| || || ||||||||||| || | ||||| Sbjct 850507 ACAACACTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 850549 >seq8555 Length=10321147 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31199 ATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGT 31258 |||||||| ||||| |||| || || || ||||| |||| || ||||| || || | Sbjct 2781026 ATTTTCGTGAAGACCGTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGATACA 2780967 Query 31259 GTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGT 31318 | |||| || || | || |||||||||||| | || || |||||||| | Sbjct 2780966 ATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAAAGA 2780907 Query 31319 CTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAACATTCA 31377 || || || || || || || | ||||| | | | ||| || || || |||||||| Sbjct 2780906 CTGATCTTTGCCGGAAAGCAACTAGAAGA-TGGACGTACTTTGTCTGACTACAACATTCA 2780848 Query 31378 AAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| || || ||||||||||| || | ||||| Sbjct 2780847 AAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 2780815 >seq4777 Length=16179633 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || ||||| | || || ||||| Sbjct 14701904 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCC 14701963 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| || || | || |||||||||||| | || || ||| Sbjct 14701964 TCGGATGCAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 14702023 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || || ||||| || ||||||| | | | | | || || || Sbjct 14702024 CAGCAAAGACTGATCTTTGCAGGCAAGCAACTGGAAGA-TGGACGTATTTTGTCTGACTA 14702082 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| ||||||| || || |||||||||| || | ||||| Sbjct 14702083 CAACGTTCAAAAGGAGTCCGCTCTTCATCTTGTGTTGAGACT 14702124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445706355265920