Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7110 134 3e-26 seq1386 131 3e-25 seq8888 89.7 1e-12 >seq7110 Length=16720443 Score = 134 bits (148), Expect = 3e-26 Identities = 297/441 (67%), Gaps = 11/441 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||||||||||||| |||| | || ||||| || |||||| Sbjct 13122108 GTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 13122167 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | |||| || ||||| | |||||||| | ||| || ||| Sbjct 13122168 CTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAC 13122227 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || ||| | || | |||||||| ||| || |||| ||| | | | | | || Sbjct 13122228 GAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACA---CCTGCTACACAAACCT 13122284 Query 102098 TCAAGAGAAAGGATTC--TTGA--AATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 || ||| | || || | | ||| |||| | || || | || ||||| || || Sbjct 13122285 TC-GGAGCAGAGAGTCAAATAAATAATCGTCA---ATGCAGTTAGGATAGAACAGGAGTT 13122340 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 ||||| | ||||| | || || | | || ||||| |||| ||||||| ||||| Sbjct 13122341 CCTCACGGAGGCCCTGACAGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTA 13122400 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT 102273 ||| ||||| |||||||| | ||| || || |||| | ||| | | || Sbjct 13122401 CATCGAATTCGTGGCAGACAGACTTATGCGGGAGCTGGGTTTTAGCAAGGTTTTCAGAGT 13122460 Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333 || || || || ||||| |||||||| || || ||||| ||||| | ||| Sbjct 13122461 AGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTCTGA 13122520 Query 102334 AAAGAGAGTCGCCGAGTATCA 102354 |||||||| | ||||||||| Sbjct 13122521 GAAGAGAGTAGGCGAGTATCA 13122541 >seq1386 Length=4420875 Score = 131 bits (144), Expect = 3e-25 Identities = 226/324 (70%), Gaps = 11/324 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||||||||||||| |||| | || ||||| || |||||| Sbjct 837656 GTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 837597 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 |||| || | ||| | |||| || ||||| | |||||||| | ||| || ||| Sbjct 837596 CTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAC 837537 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || ||| | || | |||||||| ||| || |||| ||| | | | | | || Sbjct 837536 GAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACA---CCTGCTACACAAACCT 837480 Query 102098 TCAAGAGAAAGGATTC--TTGA--AATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 || ||| | || || | | ||| |||| | || || |||| ||||| || || Sbjct 837479 TC-GGAGCAGAGAGTCAAATAAATAATCGTCA---ATGCAGTTAGAATAGAACAGGAGTT 837424 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 ||||| | ||||||| || || | | || ||||| |||| ||||||| ||||| Sbjct 837423 CCTCACGGAGGCCCTGCCAGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTA 837364 Query 102214 CATTGAATTTGTGGCAGATAAACT 102237 ||| ||||| |||||||| | ||| Sbjct 837363 CATCGAATTCGTGGCAGACAGACT 837340 >seq8888 Length=9016713 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||||||||||||| |||| | || ||||| || |||||| Sbjct 1702399 GTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 1702340 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 |||| || | ||| | |||| || ||||| | |||||||| | ||| || ||| Sbjct 1702339 CTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAC 1702280 Query 102038 GA 102039 || Sbjct 1702279 GA 1702278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989447370611080