Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7110 253 2e-62 seq1386 232 6e-56 seq8888 134 1e-26 seq1453 120 3e-22 seq1508 96.9 3e-15 >seq7110 Length=16720443 Score = 253 bits (280), Expect = 2e-62 Identities = 343/473 (73%), Gaps = 9/473 (2%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| |||||| | ||||| || | |||| || | || | || |||||||| ||||| | Sbjct 13122554 CACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAGAGAAGTTAGTCTTCCCTTCCA 13122496 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| |||||||||| ||| ||||| | ||| |||| || || | |||| | Sbjct 13122495 GTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCA 13122436 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 ||| | | ||| ||||| |||||||| || ||||| ||| ||| ||||||| Sbjct 13122435 GCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCA 13122376 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || || | ||| | | || | || | ||||||| |||||| |||| |||| Sbjct 13122375 TCCCAATGAGCTTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT 13122316 Query 11568 CAATGATTATCGACGTTATAACT---TCCTTAGATGGTGGATGTAATAAATGTTTAAACA 11624 | |||||| | | | ||| | || || ||| |||| | ||||| |||| Sbjct 13122315 TGACGATTATTTA---TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACA 13122259 Query 11625 TTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATG 11684 | | || ||||| ||||| |||||||| |||||||| || || |||||||| ||||||| Sbjct 13122258 TCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATG 13122199 Query 11685 TTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAA 11744 | | |||||||||| ||||||||| || | ||| ||||| | ||||| |||||||||| Sbjct 13122198 TGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAA 13122139 Query 11745 AGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTG 11797 |||| ||||| ||||| || ||||| ||||| | | |||||||| ||| ||| Sbjct 13122138 AGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCAT-TACGTTG 13122087 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/153 (73%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 11818 GGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCAT 11877 ||||||||| || ||||| ||||| || |||||| || || ||||| || | | || Sbjct 13122023 GGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAA--AT 13121966 Query 11878 TT--TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGA 11935 | ||||| | |||| | || || || || | | |||||||||||| ||||| Sbjct 13121965 TCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGT 13121906 Query 11936 ATATTTTCCATAGCTATTTGAAATCCATAGAAA 11968 || |||||||| || ||||| || ||||||||| Sbjct 13121905 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 13121873 >seq1386 Length=4420875 Score = 232 bits (256), Expect = 6e-56 Identities = 532/803 (66%), Gaps = 55/803 (7%) Strand=Plus/Plus Query 11457 ATAA-TCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATA 11515 |||| ||| ||||| |||||||| || ||||| ||| ||| |||||||| || || Sbjct 837337 ATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 837396 Query 11516 AGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATT 11575 || | ||| || | || | || | ||||||| |||||| |||| |||| | |||| Sbjct 837397 AGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACGATT 837456 Query 11576 ATCGACGTTATAACT---TCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACAC 11632 || | | | ||| | || || ||| |||| | ||||| ||||| | || Sbjct 837457 ATTTA---TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAG 837513 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 ||||| ||||| |||||||| |||||||| || || |||||||| |||||||| | ||| Sbjct 837514 GCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCG 837573 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 ||||||| ||||||||||| | ||| ||||| | ||||| |||||||||||||| ||| Sbjct 837574 GGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATT 837633 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTG-------------TT 11799 || ||||| || ||||| ||||| | | |||||||| ||| ||| || Sbjct 837634 CCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCAT-TACGTTGGAGAACAATGCCATT 837692 Query 11800 --GCTAGATATCCAT------------TTTCT----------------GGCCCAATCAGC 11829 | | || | | || ||| | ||||||||| || Sbjct 837693 ACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGC 837752 Query 11830 TTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATA 11887 ||||| ||||| || |||||| || |||||||| | | |||| | ||||| | Sbjct 837753 CTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTC--CCTTTCTTTG 837810 Query 11888 TTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATA 11947 |||| | | || || || || | | |||||||||||| ||||| || |||||||| Sbjct 837811 GAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATG 837870 Query 11948 GCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTT 12007 || ||| | || ||||||||||| | || || | | ||| || || ||| Sbjct 837871 GCAATTAGGAAGCCATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGC 837930 Query 12008 TCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTT 12067 | | || || |||||||| || |||||||| | |||||| || || || | ||| Sbjct 837931 TAAACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGCAAA 837990 Query 12068 ATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCT 12127 || || ||| | || || | | ||||| | | | || || || | || Sbjct 837991 ATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCC 838050 Query 12128 ACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGA 12187 || |||||| | |||||||| ||| | | || |||||||| | ||| |||||||| Sbjct 838051 ACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGG 838110 Query 12188 TACTTAATAGGGAAAATAACGAA 12210 || | ||||| || || || || Sbjct 838111 TATTCGATAGGAAAGATGACAAA 838133 >seq8888 Length=9016713 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || |||||||| |||||||| | |||||||||| ||||||||||| Sbjct 1702278 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 1702337 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 1702338 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 1702397 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 1702398 ACGACACGTTCTCC 1702411 >seq1453 Length=4135625 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 1830592 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 1830533 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 1830532 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1830473 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 1830472 CCACCACCCTTTCCCC 1830457 Score = 86.0 bits (94), Expect = 6e-12 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938 |||||| || |||||| | || || ||||||| ||||| ||||| ||||| |||| | Sbjct 1827160 TTTTCT-TAGGATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACA 1827102 Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 ||||| || |||||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 1827101 TTTTCGATGAGAATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 1827045 >seq1508 Length=3848527 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || || || ||||| |||||||| Sbjct 149381 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 149440 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | ||||| |||| || || ||||||||||| || || || || | Sbjct 149441 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 149500 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 149501 CTGTTTCTTATACCAT 149516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468461689709440