Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq780 291 7e-74 seq6777 145 7e-30 seq2230 134 1e-26 seq4113 122 7e-23 seq4114 95.1 1e-14 seq1064 93.3 4e-14 seq1674 91.5 1e-13 >seq780 Length=6765806 Score = 291 bits (322), Expect = 7e-74 Identities = 504/727 (69%), Gaps = 9/727 (1%) Strand=Plus/Minus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||||| ||| || |||| ||| || ||||| ||| || || ||||| ||||| Sbjct 32458 AGCTGAATTTTCAGCGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 32399 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 |||||||| || || |||||||||||||||| ||||||| || | ||||||||| Sbjct 32398 ACAAAGTCACCTGGCTTCAGGCCCGTGACGTGTGCGATCATGTA-----GCAGGGCGTAG 32344 Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||||||||| || || || || ||||||||||| | ||| ||||||||||||||||| Sbjct 32343 CTGGCGATGTTGAAGGGCACACCCAGGCCCATGTCTCCTGACATCTGGTACAGCTGGCAG 32284 Query 21093 GACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||||||| || ||||||| ||||| || | |||| || || || || ||||| Sbjct 32283 GACAGCTCACCATTCACCACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATG 32224 Query 21153 CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTG 21212 | | ||| || || ||||| || |||| | ||| | | |||| || | Sbjct 32223 AGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAGGGTTGGTT 32164 Query 21213 TTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCG 21272 || ||| || ||| | |||| || || || || ||| | || | | || Sbjct 32163 TTGATTGTGTCAGTCACTTTTTGCAGTTGATCTACTCCTTGATCTGAATAATCTGAATCC 32104 Query 21273 GCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCG 21332 | |||| || ||||||||||| |||||||| || || || || || || | ||| Sbjct 32103 ATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCC 32044 Query 21333 CCCTC-GCGGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGT 21390 || || || ||| ||| ||| | || | |||| ||| | |||||||| | || | Sbjct 32043 CCTTCTGCTCTGGT-GGAGAATCCCAG-GCTGTCCAAGAAGTCTCGGGACCCATTGGCAT 31986 Query 21391 CCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACC 21450 |||| ||||| || || | ||||| || | | || ||||| ||| ||||||||| Sbjct 31985 CCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACC 31926 Query 21451 ACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACT 21510 |||||||||||||| || ||| | || || || | |||||| || | ||||||||| | Sbjct 31925 ACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATT 31866 Query 21511 CGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCC 21570 | || || ||| | || || ||||| | |||||||| ||| |||||| ||| || | Sbjct 31865 CATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCTGTGC 31806 Query 21571 TGTCCTCCCTCTGCACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAGCT 21630 ||| ||| || | | |||| | || || | ||| ||||||||||||||| Sbjct 31805 GGTCATCCTTCCGAAAGCCGCAGCGGAGGATGTGCTCGATCTGCCCCAAGTACTGCAGCT 31746 Query 21631 CGCCGTG 21637 | ||||| Sbjct 31745 CCCCGTG 31739 >seq6777 Length=13026147 Score = 145 bits (160), Expect = 7e-30 Identities = 130/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 785393 TCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 785334 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||| ||||||||||||||||||| || Sbjct 785333 GCACACCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCA 785274 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||||| ||||| || | |||| || || || || ||||| Sbjct 785273 CCACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCAT 785231 >seq2230 Length=20112346 Score = 134 bits (148), Expect = 1e-26 Identities = 124/156 (79%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| ||| || || ||||| ||||| ||| |||| || || ||||||| |||| ||| Sbjct 11223172 GTAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 11223231 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 ||||||| || || || ||||| |||||||||| ||| || | || || |||||| | Sbjct 11223232 TGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCT 11223291 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTC 21100 ||| | |||||||||||||||| |||||||||||| Sbjct 11223292 GTCTCCTGACCTCTGGTACAGCT-GCAGGACAGCTC 11223326 >seq4113 Length=38937830 Score = 122 bits (134), Expect = 7e-23 Identities = 244/357 (68%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGTA 2949 || ||||||||| | ||||| | | ||||||| ||| | || | | ||| || Sbjct 13965437 CTTATAAACAGAACTGCCTCCCACTATCCAGACCATGTCCACTTTATTTGTTAATTCTGG 13965496 Query 2950 TTG-TCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008 ||| || || | || || || || || || |||| || ||||| || ||||| || | Sbjct 13965497 TTGCTCAGTA-AGTTTTAAGGCTTCATCCAGACTTCTGGCAAGAAAATGAGCTCCCTGTG 13965555 Query 3009 GTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCT 3068 | ||||| | |||||| || | || ||||||||||||| | | ||| || |||| Sbjct 13965556 GAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCT 13965615 Query 3069 TTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAA 3128 | || || ||||| ||||||||| | | |||||||| ||| ||||| || |||| | | Sbjct 13965616 TCTCTGGAATGGAGAACCATGTTTTCCTACCCATAATCACCGAATTCTGTTTACCTTCTA 13965675 Query 3129 CCGATGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAG 3188 | || | || | |||||| | || |||||| | ||| || || || ||||| | Sbjct 13965676 CTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGG 13965735 Query 3189 GCATTGTTCCGTTTTTACCAATTCCTAATTGTTC--ATCAACTGCAACGATGCAGTT 3243 ||| ||||| || ||||| || | ||||| || |||||||||||||| Sbjct 13965736 GCAGGTCCCCGTTCTTGCCAATGCCCA--TGTTCTGGGACACAGCAACGATGCAGTT 13965790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 174/256 (68%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| | ||||| || || ||||| | | Sbjct 25459076 TTTAATGCATCATCCAGACTTTTGGCAAGAAAAGGAGCTCCCTGTGGAGGTTCCTTGAGT 25459135 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTC----AGGGAT 3078 ||||| | | || ||||||||||||| | | ||| || ||||| || | | || Sbjct 25459136 TCTCTAATGAGAACTATATTAATTCTGTCCCTTAAAGGTCGATTCTTCTCTGGAATGAAT 25459195 Query 3079 GGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGT 3138 ||| ||||| ||| | | |||||||| |||| ||||| || |||| | | || | || Sbjct 25459196 GGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTGCTGAAGAGGT 25459255 Query 3139 AGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCC 3198 | |||||| | || |||||| | ||| || || || ||||| |||| || || Sbjct 25459256 TGTGGTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCAGGGGCCAGGGCA-GGTCCC 25459314 Query 3199 -GTTTTTACCAATTCC 3213 ||| || ||||| || Sbjct 25459315 TGTTCTTGCCAATGCC 25459330 >seq4114 Length=13981371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 202/299 (68%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 2894 TAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGTATTG- 2952 |||||||| | ||||| | | ||| ||| ||| | || | | ||| || ||| Sbjct 6488702 TAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGTTAATTCTGGTTGC 6488761 Query 2953 TCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGG 3012 || || || || || ||||| || || || | || ||||| || |||| || || || Sbjct 6488762 TCAGTA-AATTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGCACTCCCTGTGGAGG 6488820 Query 3013 TTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTC 3072 ||| | |||||| || | || ||||||||||||||| | ||| || ||||| || Sbjct 6488821 TTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTTCTTTAAAGGTCGATTCTTCTC 6488880 Query 3073 AGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGA 3132 || | ||| || || || | | |||||||| |||| ||||| || |||| | || || Sbjct 6488881 TGGAAAGGAGAAGCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGA 6488940 Query 3133 TGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 | || | |||||| | || |||||| | ||| || || || ||||| |||| Sbjct 6488941 AGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGGGCA 6488999 >seq1064 Length=6047857 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| || ||||| || || ||||| | | Sbjct 2122643 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTGTGGAGGTTCCTTGAGT 2122584 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||||| | | || || ||||| || || ||||| Sbjct 2122583 TCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGATCGATTCTTCTCTGGAATGGAG 2122524 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| | | || | || | Sbjct 2122523 AACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTGCTGAAGAAGTTGTG 2122464 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| | || |||||| | ||| || || || ||||| |||| Sbjct 2122463 GTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGGGCA 2122415 >seq1674 Length=23033003 Score = 91.5 bits (100), Expect = 1e-13 Identities = 183/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 2893 ATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGTATTG 2952 ||||||||| | ||||| | | ||| ||| ||| | || | | ||| || ||| Sbjct 12864751 ATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGTTAATTCTGGTTG 12864810 Query 2953 -TCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTG 3011 || ||| | || || ||||| || || || | || ||||| || ||||| || || | Sbjct 12864811 CTCAATA-AGTTTTAAGGCATCATCCAGACTTGTGGCAAGAAAATGAGCTCCCTGTGGAG 12864869 Query 3012 GTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTT 3071 |||| | |||||| || | || ||||||||||||| | | || | ||||| | Sbjct 12864870 GTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGTTTGATTCTTCT 12864929 Query 3072 CAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCG 3131 | || | ||| ||||| ||| | | ||||| || |||| ||||| || |||| | || | Sbjct 12864930 CTGGAACGGAGAACCAGGTTTTCCTGCCCATGATCACCAAATTCTGTTTACCTTCTACTG 12864989 Query 3132 ATGGCGTAGACGTCATTTTCTGAAAATAC 3160 | | || | |||||| | || |||||| Sbjct 12864990 AAGAGGTTGTAGTCATTCTTTGGAAATAC 12865018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427719819108480