Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq7110 118 8e-22 seq1386 114 9e-21 >seq7110 Length=16720443 Score = 118 bits (130), Expect = 8e-22 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 |||| || | |||||||| || || ||||| || | |||||||| || ||||| | || Sbjct 13122101 ACGTTTCGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGAT 13122160 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 ||||||||| |||||||| || ||||| || | | |||||||| || | ||||| Sbjct 13122161 ATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAG 13122220 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAA 22919 | | ||||| ||| |||||||||||||||| || || |||| | || || | |||| Sbjct 13122221 CAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCTGCTACACAA 13122280 Query 22920 ACC 22922 ||| Sbjct 13122281 ACC 13122283 >seq1386 Length=4420875 Score = 114 bits (126), Expect = 9e-21 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 |||| || | |||||||| || || ||||| || | |||||||| || ||||| | || Sbjct 837663 ACGTTTCGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGAT 837604 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 ||||||||| || ||||| || ||||| || | | |||||||| || | ||||| Sbjct 837603 ATTCTGGCTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAG 837544 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAA 22919 | | ||||| ||| |||||||||||||||| || || |||| | || || | |||| Sbjct 837543 CAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCTGCTACACAA 837484 Query 22920 ACC 22922 ||| Sbjct 837483 ACC 837481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356186814950728