Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1386 241 1e-58 seq7110 203 3e-47 seq8888 123 2e-23 >seq1386 Length=4420875 Score = 241 bits (266), Expect = 1e-58 Identities = 457/674 (68%), Gaps = 43/674 (6%) Strand=Plus/Plus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 || ||||| || || | || ||||| ||||| || | ||||| ||||| ||||||||| Sbjct 837493 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGT 837552 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || || |||||||| | || ||||||| ||||||||||| | ||| ||||| | ||| Sbjct 837553 TCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCA 837612 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCA--- 14030 || || || |||||||| ||||| || ||||||||||| |||| || ||||||||| Sbjct 837613 AAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTA 837672 Query 14031 --------AACGATGCTTTTTTGTTCGATATCCAT-------------TT--------TC 14061 ||| |||| || ||| || | | || || || Sbjct 837673 CGTTGGAGAACAATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATC 837732 Query 14062 TAGC-------CCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 ||| ||| || | || || || | | || |||||| |||||||| || || Sbjct 837733 CAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAG 837792 Query 14115 AAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 | | ||||| | ||||| | | | |||||| || ||||| || | |||||||||||| Sbjct 837793 AGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCA 837852 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 || || ||||||||||| || || | || ||||| || || | ||||||| || Sbjct 837853 GAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACAGGCTTCCGTAATCTGA 837912 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 ||||| | ||| | |||| |||||||| ||||| |||||||| |||||||| Sbjct 837913 ACTTCTTGGCTAAACTGCTAAACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAG 837972 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGA 14353 || |||| | | ||| || ||| ||| ||| || || || ||| | | || Sbjct 837973 AAAGCCAGAACATGCAAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA 838032 Query 14354 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 | ||||| ||||| || || || ||| |||||||||| ||| ||||||| ||||| Sbjct 838033 -ATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATA 838091 Query 14414 CATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTCGAAGATG-TTTCTT 14472 ||| ||| || || | ||| |||||||| | ||||| | | | || |||||| Sbjct 838092 CATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAAGC-GGCGGGTGTTTTCTT 838150 Query 14473 TAAGAATTGGTTCC 14486 | |||| ||||||| Sbjct 838151 TCAGAAGTGGTTCC 838164 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 837127 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 837186 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| ||||| || |||||||||||| Sbjct 837187 TCCAGTGAAATATTCTCCATGAAGTCAAATGGATTT 837222 >seq7110 Length=16720443 Score = 203 bits (224), Expect = 3e-47 Identities = 505/769 (66%), Gaps = 47/769 (6%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || ||| |||||||||| || ||| Sbjct 13122559 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 13122500 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||||||| ||||| |||||||| |||||||||||| | | || || || | || Sbjct 13122499 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 13122440 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || || || | | ||| || || | || || || || || ||| ||| ||| Sbjct 13122439 CCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 13122380 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || || || || | | | || | || || | |||||| || Sbjct 13122379 TTCATCCCAATGAGCTTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 13122320 Query 13806 GCCT---CTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTA 13862 || | | |||| || ||| | ||| | ||||| | | || ||||| Sbjct 13122319 GCATTGACGATTATT-TATTTG--ACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 13122263 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 || || | || ||||| ||||| || | ||||| ||||| ||||||||||| || ||| Sbjct 13122262 AACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 13122203 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 ||||| | || ||||||| ||||||||| || | ||| ||||| | ||||| || || Sbjct 13122202 AATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCA 13122143 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCA-----------A 14031 |||||||| ||||| || ||||||||||| |||| || ||||||||| | Sbjct 13122142 GAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGA 13122083 Query 14032 ACGATGCTTTTTTGTTCGATATCCAT------------TTTCT----------------A 14063 || |||| || ||| || | | || ||| | Sbjct 13122082 ACAATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAG 13122023 Query 14064 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCC 14123 ||||| || | || || || | | || |||||| ||||| || || || | | ||||| Sbjct 13122022 GCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCC 13121963 Query 14124 TTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14182 | ||||| | | |||| |||||| || ||||| || | ||||||||||| || ||||| Sbjct 13121962 CTTTCTTTGGAATCTTG-AATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTAT 13121904 Query 14183 GTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGA 14242 ||||||||| || || || || ||||| || | ||||||| || ||||| Sbjct 13121903 GTTTTCCATGGCAATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTG 13121844 Query 14243 GTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 | || | || ||| |||||||| |||| || ||||| |||||| Sbjct 13121843 GCTAAGCCACTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCA 13121795 >seq8888 Length=9016713 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| ||||||||||| || |||||||| | || ||||||| |||||||||| Sbjct 1702276 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 1702335 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| || ||||||||||| | Sbjct 1702336 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 1702395 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 1702396 CTACGACACGTTCTCC 1702411 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 1700559 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 1700618 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| ||||| || |||||||||||| Sbjct 1700619 TCCAGTGAAATATTCTCCATGAAGTCAAATGGATTT 1700654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479663380638400