Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1386 212 6e-50 seq7110 172 5e-38 seq8888 120 3e-22 >seq1386 Length=4420875 Score = 212 bits (234), Expect = 6e-50 Identities = 450/675 (67%), Gaps = 45/675 (7%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || ||||| || || | || ||||| ||||| || | ||||| ||||| ||||||||| Sbjct 837493 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGT 837552 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || || |||||||| | || ||||||| ||||||||||| | ||| ||||| | || Sbjct 837553 TCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCA 837612 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCA--- 13818 || || || |||||||| ||||| || ||||||||||| |||| | ||||||||| Sbjct 837613 AAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTA 837672 Query 13819 --------AACGATGCTTTTTTGTTTGATATCCAT------------TTTCT-------- 13850 ||| |||| || ||| || | | || ||| | Sbjct 837673 CGTTGGAGAACAATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATC 837732 Query 13851 --------AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAAT 13902 ||||| || | || || || | | || |||||| || || || ||||| Sbjct 837733 CAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAG 837792 Query 13903 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 13962 | | |||| | ||||| | | | |||||| || ||||| || | |||||||||||| Sbjct 837793 AGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCA 837852 Query 13963 GAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14022 || || |||||||| || || || | || ||||| ||||| | ||||| | || Sbjct 837853 GAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACAGGCTTCCGTAATCTGA 837912 Query 14023 ACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAA 14082 || || | ||| | ||||||||||||| || || |||||||| |||||||| Sbjct 837913 ACTTCTTGGCTAAACTGCTAAACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAG 837972 Query 14083 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCT 14142 || |||| | | ||| || ||| ||| ||| || || || ||| | ||| Sbjct 837973 AAAGCCAGAACATGCAAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGT--GCT 838030 Query 14143 AAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14200 || ||||| ||||| || || || ||| |||||||||| ||| ||||||| |||| Sbjct 838031 GAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTAT 838090 Query 14201 ACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATG-TTTCT 14259 |||| ||| || || | ||| |||||||| | ||||| | | | || ||||| Sbjct 838091 ACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAAGC-GGCGGGTGTTTTCT 838149 Query 14260 TTAAGAATTGGCTCC 14274 || |||| ||| ||| Sbjct 838150 TTCAGAAGTGGTTCC 838164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 837127 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 837186 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| ||||| || || ||||||||| Sbjct 837187 TCCAGTGAAATATTCTCCATGAAGTCAAATGGATTT 837222 >seq7110 Length=16720443 Score = 172 bits (190), Expect = 5e-38 Identities = 498/769 (65%), Gaps = 47/769 (6%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||| | |||||||| || ||| Sbjct 13122559 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 13122500 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||||||| ||||| |||||||| || ||||||||| | | || || || | || Sbjct 13122499 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 13122440 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || || || | | ||| || || | || || || || || ||| ||| ||| Sbjct 13122439 CCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 13122380 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || || || || | | | || | || || | |||||| || Sbjct 13122379 TTCATCCCAATGAGCTTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 13122320 Query 13594 GCCT---CGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTA 13650 || | || |||| | || | | | | | | ||||| | | || ||||| Sbjct 13122319 GCATTGACGATTAT--TTATTTGACTC-TCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 13122263 Query 13651 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13710 || || | || ||||| ||||| || | ||||| ||||| ||||||||||| || ||| Sbjct 13122262 AACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 13122203 Query 13711 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770 ||||| | || ||||||| ||||||||| || | ||| ||||| | || || || || Sbjct 13122202 AATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCA 13122143 Query 13771 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCA-----------A 13819 |||||||| ||||| || ||||||||||| |||| | ||||||||| | Sbjct 13122142 GAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGA 13122083 Query 13820 ACGATGCTTTTTTGTTTGATATCCAT------------TTTCT----------------A 13851 || |||| || ||| || | | || ||| | Sbjct 13122082 ACAATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAG 13122023 Query 13852 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCC 13911 ||||| || | || || || | | || |||||| || || || ||||| | | |||| Sbjct 13122022 GCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCC 13121963 Query 13912 TTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 | ||||| | | |||| |||||| || ||||| || | ||||||||||| || ||||| Sbjct 13121962 CTTTCTTTGGAATCTTG-AATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTAT 13121904 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGA 14030 |||||| || || || || || ||||| ||| | ||||| | || || || Sbjct 13121903 GTTTTCCATGGCAATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTG 13121844 Query 14031 GTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 | || | || ||| ||||||||| || | || ||||| |||||| Sbjct 13121843 GCTAAGCCACTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCA 13121795 >seq8888 Length=9016713 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| ||||||||||| || |||||||| | || ||||||| |||||||||| Sbjct 1702276 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 1702335 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| || ||||||||||| | Sbjct 1702336 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 1702395 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 1702396 CTACGACACGTTCTCC 1702411 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 1700559 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 1700618 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| ||||| || || ||||||||| Sbjct 1700619 TCCAGTGAAATATTCTCCATGAAGTCAAATGGATTT 1700654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478524334088640