Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1386 289 4e-73 seq7110 279 7e-70 seq1508 141 1e-28 seq8888 132 6e-26 seq1453 107 3e-18 seq5999 84.2 3e-11 >seq1386 Length=4420875 Score = 289 bits (320), Expect = 4e-73 Identities = 538/792 (68%), Gaps = 42/792 (5%) Strand=Plus/Plus Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 ||| ||||| | |||||| || || ||||||| |||||||| || || || || Sbjct 837342 TCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 837401 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015 ||||| || ||| | || || || || ||||| || || || | || || | Sbjct 837402 CACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACGATTATTTA 837461 Query 42016 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 42075 | | ||| | | || ||| | | | ||||| ||||||| || || || || Sbjct 837462 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTC 837521 Query 42076 GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 42135 ||||| | |||||| ||||| ||||| | ||| |||||||| ||||| |||||||| || Sbjct 837522 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAG 837581 Query 42136 GCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTAC 42195 || || ||||| ||||| ||||| || ||||| || |||||||||||||||||||| || Sbjct 837582 ACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 837641 Query 42196 TGCCGCAAAGGCAATAAGTCTCTCTCCATAACC--GG----CACTGTCAT---GT----- 42241 ||| |||||||| | | | ||||||| || || || || ||| || Sbjct 837642 TGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTTGGAG 837701 Query 42242 -----------AT-CCACTTTT-----GA-----------GCCCAATCGGCCTTCTTTTT 42273 || || |||| || |||||||| |||||||| || Sbjct 837702 AACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTT 837761 Query 42274 TACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 42333 |||||||||||| || || || || || |||||| | | |||| || |||||||| Sbjct 837762 TACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAAT 837821 Query 42334 ATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAA 42393 || || || || | |||||||||||||| ||||| |||||||| ||||| || | || Sbjct 837822 GTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAA 837881 Query 42394 TCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATT 42453 || |||||||| | ||| || |||| ||| |||||| | ||| | | | | || || Sbjct 837882 GCCATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTAAACCAAGTT 837941 Query 42454 TTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 42513 ||| || ||||| || ||||| |||||||| || |||| ||||| || |||||| | Sbjct 837942 TTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGCAAAATGAAATATCT 838001 Query 42514 TTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTAC 42573 || || || | | | ||| | | || || || || | || || ||||| | Sbjct 838002 CTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGC 838061 Query 42574 CGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGG 42633 |||||||| || || || || || |||||||| | ||| |||||||| |||| || || Sbjct 838062 TGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGG 838121 Query 42634 GAAAATAACAAA 42645 || || ||||| Sbjct 838122 AAAGATGACAAA 838133 >seq7110 Length=16720443 Score = 279 bits (308), Expect = 7e-70 Identities = 645/971 (66%), Gaps = 47/971 (5%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 41775 ||| |||||| |||| || | ||| ||| ||| || ||||| |||||||| | Sbjct 13122602 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACATCACTCCCATCCT 13122543 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || || || || || | || || | || |||||||| ||||||| ||| ||||| || Sbjct 13122542 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 13122483 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 ||| || ||||| ||||| || | ||| || |||| |||| || || | Sbjct 13122482 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCCGCATAAG 13122423 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 ||| ||||| | |||||| || || ||||||| |||||||| || || || || Sbjct 13122422 TCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 13122363 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015 |||| || ||| | || || || || ||||| || || || | || || | Sbjct 13122362 CACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTA 13122303 Query 42016 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 42075 | | ||| | | || ||| | | | ||||| ||||||| || || || || Sbjct 13122302 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTC 13122243 Query 42076 GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 42135 ||||| | |||||| ||||| ||||| | ||| |||||||| ||||| |||||||| || Sbjct 13122242 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAG 13122183 Query 42136 GCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTAC 42195 || || || || ||||| ||||| || ||||| || |||||||||||||||||||| || Sbjct 13122182 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 13122123 Query 42196 TGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGG----CACTGTCAT---GT----- 42241 ||| |||||||| | | | ||||||| || || || || ||| || Sbjct 13122122 TGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTTGGAG 13122063 Query 42242 ----AT--------CCACTTT-----TGA-----------GCCCAATCGGCCTTCTTTTT 42273 || || |||| || |||||||| |||||||| || Sbjct 13122062 AACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTT 13122003 Query 42274 TACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 42333 |||||||||||| || || ||||| || |||||| | | |||| || ||||| || Sbjct 13122002 TACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTGAAT 13121943 Query 42334 ATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAA 42393 || || || || | |||||||||||||| ||||| |||||||| ||||| || || || Sbjct 13121942 GTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTTTCCATGGCAATTTGGAA 13121883 Query 42394 TCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATT 42453 || |||||| | ||| || |||| ||| |||||| | || | || | | || Sbjct 13121882 GCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCACTCCACCAGGTT 13121823 Query 42454 TTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 42513 ||| || |||| |||||||| |||||| | || | || ||||| | |||||| | Sbjct 13121822 TTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAGGACATGCGAAGTGAAATATCT 13121763 Query 42514 TTCGTCCGGTGTTAATTTATTCC-AATCATTGATATCTTTAGATATATCTACTTCTTCTA 42572 | || || || | |||| | | || || || || | || || || || Sbjct 13121762 CTACTCAGG-CTTCAGGGCTTCCTGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAG 13121704 Query 42573 CCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTG 42632 ||||||| || || || || || || ||| |||| | ||| |||||| | |||| || | Sbjct 13121703 CCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCAAATATCACGGTATTCGATAG 13121644 Query 42633 GGAAAATAACA 42643 | || || ||| Sbjct 13121643 GAAAGATGACA 13121633 >seq1508 Length=3848527 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | | Sbjct 149381 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 149440 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 149441 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 149500 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 149501 CTGTTTCTTATACCAT 149516 Score = 104 bits (114), Expect = 3e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| || | | | ||| |||||||| || || || || ||||||| Sbjct 153724 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 153783 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||||||||| || |||| |||||| | || || ||||| || ||||| || | Sbjct 153784 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 153843 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 | | | |||||||| || ||||| | ||||| || ||||| || || || Sbjct 153844 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGG 153895 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 158211 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 158270 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 158271 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 158330 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 158331 TCCAGGTAAATAGC 158344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | || ||||| || || |||||||| || ||||| || || ||| Sbjct 166917 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 166976 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || |||||||| | || ||||| || || || || || | || | ||| ||| Sbjct 166977 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATGCCCACAGATACCCTCATCAAC 167036 Query 72538 ATATGCTGAGGTCTTTCA 72555 |||||||| ||||||||| Sbjct 167037 ATATGCTGTGGTCTTTCA 167054 >seq8888 Length=9016713 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| ||||| | ||| |||||||| ||||| |||||||| || || || |||| Sbjct 1702276 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 1702335 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||||||||| ||||| ||||||| Sbjct 1702336 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 1702395 Query 42207 C 42207 | Sbjct 1702396 C 1702396 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 1704272 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 1704331 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || |||||||| | ||| || |||| ||| |||||| Sbjct 1704332 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 1704377 >seq1453 Length=4135625 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| |||||||| || ||||| ||||| || || | || || Sbjct 1830590 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 1830531 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 1830530 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1830472 >seq5999 Length=11637418 Score = 84.2 bits (92), Expect = 3e-11 Identities = 172/255 (67%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857 |||||| || ||||| ||| | || || || || ||||| | ||| ||||| || Sbjct 8324997 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 8324938 Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917 | |||||| | | |||| |||| | | || ||||| || |||| ||| ||| | || || Sbjct 8324937 TATTTCTGGGTGAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 8324878 Query 39918 ATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 39977 | || | ||| ||| ||||| || | || | ||||| ||||||||||| Sbjct 8324877 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACAACCATTTCCTCTATAATCTTC 8324818 Query 39978 GTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGAGC 40034 ||| | ||||| |||||| ||| || |||| | || ||||| | ||||| Sbjct 8324817 ATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 8324758 Query 40035 TATTCTACCATAGCA 40049 || ||| |||||||| Sbjct 8324757 TACTCTCCCATAGCA 8324743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671048797549760