Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq780 181 2e-40 seq7110 118 2e-21 seq2230 86.0 9e-12 >seq780 Length=6765806 Score = 181 bits (200), Expect = 2e-40 Identities = 483/733 (66%), Gaps = 9/733 (1%) Strand=Plus/Plus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 |||||| |||| ||||| ||| || |||||| || |||||| | ||||| | Sbjct 31871 CCTCTGCTGACAACCAAACGTGTTTTCTGCAAGGGTGTTTCGGAGGAGTTGCTGTGGTTT 31930 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACATTTGGAGCGGC 70015 || ||||| || || || || |||||| ||||| || | || ||| | | Sbjct 31931 ATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCC 31990 Query 70016 AACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTG 70075 || | ||| | | ||||| || || ||| || |||| ||| || ||| | Sbjct 31991 AATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGCAGAAGGGGATTTA 32050 Query 70076 GGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGACA 70135 || ||||| || || || ||||||||||| | || || | || ||| || || Sbjct 32051 GGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCCGAATACAAAGATATGGATTCA 32110 Query 70136 GACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAAT 70195 || ||||| | ||| || || |||||| |||| | | | | |||||| |||| ||||| Sbjct 32111 GATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTGACTGACACAATCAAAACCAAC 32170 Query 70196 CCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCA 70255 || || || || ||| | |||| | |||||||| |||| | | | ||||| Sbjct 32171 CCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCCTCTCATGGCC 32230 Query 70256 CTACCACCGTGTCACTGT-TTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTT 70314 ||||| ||||| ||| || || ||||| ||| | |||| | |||| ||| Sbjct 32231 CTACCCCCGTGCCACGCCCTTTGC-CAGTTCTACGTGGTGAATGGTGAGCTGTCCTGCCA 32289 Query 70315 AATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTC 70374 |||| |||| | | ||||||||||| ||||| ||||| ||||| || ||||| | Sbjct 32290 GCTGTACCAGATGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAACATCGCCAGCTACGC 32349 Query 70375 TATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACAC 70434 || | ||||||| || ||| | || |||||||| | || || |||||||| Sbjct 32350 CCTGCT-----ACATGATCGCACACGTCACGGGCCTGAAGCCAGGTGACTTTGTACACAC 32404 Query 70435 CATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACG 70494 | || || || ||| | || | |||||||| ||||| | || | || || | || Sbjct 32405 TTTGGGAGATGCACACATTTACCTGAATCACATTGAGCCGCTGAAAATTCAGCTTCAGCG 32464 Query 70495 GGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCT-CGTAAAGTTGAAAATATTGACAGTT 70553 || || || ||||| |||||||| || | || || |||||||| || ||||| | Sbjct 32465 AGAACCAAGGCCTTTCCCCAAGCTC-AGAATCCTTCGAAAAGTTGAGAAAATTGATGACT 32523 Query 70554 TTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTC 70613 | ||| ||||| ||| || |||| ||| |||| |||| | ||| |||| Sbjct 32524 TCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCACCCGACTATTAAAATGGAAA 32583 Query 70614 TGGCTGTTTAGAG 70626 ||||||||||||| Sbjct 32584 TGGCTGTTTAGAG 32596 >seq7110 Length=16720443 Score = 118 bits (130), Expect = 2e-21 Identities = 294/444 (66%), Gaps = 17/444 (4%) Strand=Plus/Plus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || || || || || || || ||||||||||| ||| |||||| | || || ||| Sbjct 13122108 GTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 13122167 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT----AACGAGTTTATATCTCG 125545 |||||||| || ||||| |||||||| || |||| | || || |||| | Sbjct 13122168 CTCAAGAAACGAGGACTGATGCCCGGCCT----CACATTTTCCAATGAACTTATTAGCAG 13122223 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGA 125605 ||||||||| ||||||||||||||||| || |||| ||| | |||| | | | Sbjct 13122224 AGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTT---CAAACACCTGCTACACAA 13122280 Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665 | | | | | || | |||| | || | | |||| || ||||||||||| Sbjct 13122281 ----ACCTTCGGAGCAGAGA--GTCAAATAAATAATCGTCAATGCAGTTAGGATAGAACA 13122334 Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||||| || || || |||| | || | | ||||| ||||| |||| | ||| Sbjct 13122335 GGAGTTCCTCACGGAGGCCCTGACAGTGAAGCTCATTGGGATGAATTGCACTTTGATGAA 13122394 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTA 125785 ||||||| || || |||||||| | || || ||| || | ||||| ||| Sbjct 13122395 GCAGTACATCGAATTCGTGGCAGACAGACTTATGCGGGAGCTGGGTTTTAGCAAGGTTTT 13122454 Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845 || | | ||||| ||||| || ||| | || ||||| || || ||||| ||||| Sbjct 13122455 CAGAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTT 13122514 Query 125846 TTTCGAGAAGAAGGTCAGCGAGTA 125869 | ||||||| || ||||||| Sbjct 13122515 CTCTGAGAAGAGAGTAGGCGAGTA 13122538 >seq2230 Length=20112346 Score = 86.0 bits (94), Expect = 9e-12 Identities = 211/319 (66%), Gaps = 6/319 (2%) Strand=Plus/Minus Query 70317 TGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTA 70376 |||| |||||| | |||| |||||| ||||| |||| ||| | || |||||| | Sbjct 11223311 TGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTCCTTCAACGTCGCCAGCTATGCCC 11223252 Query 70377 TGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCA 70436 || | || ||||||| || ||||| || |||||||| | || | |||||||| Sbjct 11223251 TGCTCACCTACATGATCGCACACATCACAGGCCTGAAGCCAGGTGACTCTGTACACACTT 11223192 Query 70437 TTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGG 70496 | || || || ||| | || | ||||||| |||| | || |||| || | | | Sbjct 11223191 TGGGAGATGCACACATTTACCTGGATCACATTGAGCTGCTGAAAATGCAGCTTCAGGGAG 11223132 Query 70497 AGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATAT---TGACAGTT 70553 | || || ||||| || ||||| | | | | |||||||| || || |||| | Sbjct 11223131 AACCAAGGCCTTTCCCAAAGCTCAAAATCCTTGGAAAAGTTGAGAAAATCTATGAC---T 11223075 Query 70554 TTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTC 70613 | ||| ||||| ||| || |||| ||| ||| | || | ||| |||| Sbjct 11223074 TCAAGGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCATCCCACTATTAAAATGGAAA 11223015 Query 70614 TGGCTGTTTAGAGAGATAT 70632 ||||||||||||| | ||| Sbjct 11223014 TGGCTGTTTAGAGTGCTAT 11222996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740959379325760