Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1386 190 2e-43 seq1453 114 1e-20 seq8888 105 6e-18 >seq1386 Length=4420875 Score = 190 bits (210), Expect = 2e-43 Identities = 513/787 (65%), Gaps = 47/787 (6%) Strand=Plus/Plus Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 |||||| || || || || |||||||| ||||| ||| || ||||| || || | || Sbjct 837342 TCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 837401 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 || |||| || || || | || | | |||||| |||||| | || | ||| | Sbjct 837402 CACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACGATTATTTA 837461 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161 | | | | | ||| | || | | || || || ||||||| || ||||| || Sbjct 837462 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTC 837521 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 |||||| || || || ||||| || || || || || |||||||| || || ||||| || Sbjct 837522 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAG 837581 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 ||||||||||| | ||| ||||| | ||||| ||||| ||||| || |||||||| || Sbjct 837582 ACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 837641 Query 13282 TGCTGCAAACGCTATCAACCTTTCACCA-TACGT------ACTAT----TT--------- 13321 ||| ||||| |||| || | ||| ||| ||||| || || || Sbjct 837642 TGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTTGGAG 837701 Query 13322 ------------TTACTCTCTATCCACTTTC-------TGGCCCAGTTTGCTTTTTGTTT 13362 | |||| | ||| | || |||||| | ||| || | || Sbjct 837702 AACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTT 837761 Query 13363 AACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAAT 13422 || || ||| | || || ||||| || | | | | |||| || ||| ||| Sbjct 837762 TACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAAT 837821 Query 13423 ATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAA 13482 ||||| || || | | ||||||||||| ||||| || |||||||| || ||| |||| Sbjct 837822 GTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAA 837881 Query 13483 ACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTT 13542 ||||| ||||| | || || | | ||||||||| | ||| | | ||||| Sbjct 837882 GCCATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTAAACCAAGTT 837941 Query 13543 TTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtttttt 13602 ||| || ||||| || ||||| || ||||| ||||| || | ||| ||| || | | | Sbjct 837942 TTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGCAAAATGAAATATCT 838001 Query 13603 ttC----GTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCT 13658 || | ||| | ||| ||| | ||| || || || | || ||||| | Sbjct 838002 CTCCTCAGGCTTC--AGGGCTT--CCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTT 838057 Query 13659 CAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAA 13718 || | |||||||| ||||| |||| |||||||||||| ||| ||||| | || | | Sbjct 838058 CAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGA 838117 Query 13719 TGGGAAA 13725 | ||||| Sbjct 838118 TAGGAAA 838124 >seq1453 Length=4135625 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| ||| | Sbjct 1830592 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 1830533 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 1830532 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1830473 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 1830472 CCACCACCCTTTCCCC 1830457 >seq8888 Length=9016713 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 || ||||| || || || || || |||||||| || || ||||| || ||||||||||| Sbjct 1702278 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 1702337 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||| | ||||| ||||| ||||| || |||||||| ||||| ||||| ||| Sbjct 1702338 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 1702397 Query 13295 A 13295 | Sbjct 1702398 A 1702398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430925798003952