Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq780 262 3e-65 seq2230 147 1e-30 seq6777 102 6e-17 >seq780 Length=6765806 Score = 262 bits (290), Expect = 3e-65 Identities = 407/580 (70%), Gaps = 6/580 (1%) Strand=Plus/Minus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 |||| || || || || || | || |||||| | |||||||| || | ||||| ||||| Sbjct 32484 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCGGCTCAATGTGATTCAGGT 32425 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | ||| || ||||||| |||||| ||||| || || || | || || || |||| | Sbjct 32424 AAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGACGTGTG 32365 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||||||| | || ||||||||||||||| ||||| || || | ||||||| Sbjct 32364 CGATCATGTA-----GCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGT 32310 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | || ||| ||||||| ||||| || || ||||| | | |||||| ||||| || Sbjct 32309 -CTCCTGACATCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACGTAGAACTGGCAA 32251 Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686 | || || |||||| || || || || || | ||||| || ||||| || |||| | Sbjct 32250 AGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGG 32191 Query 25687 ATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCC 25746 ||||| | ||||| || |||||| |||| || | |||||||| ||||| Sbjct 32190 ATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCT 32131 Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCAC 25806 || || | || || |||| ||| || |||| || || || |||| ||||||| Sbjct 32130 ACTCCTTGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCAC 32071 Query 25807 TGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCC 25866 || || || || || || |||| || || ||| | ||| || ||| | ||| Sbjct 32070 TGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCC 32011 Query 25867 AAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 25926 || ||||||| ||| |||||||| |||||||| || || ||||| || ||||| || Sbjct 32010 AAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTA 31951 Query 25927 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCG 25966 | ||||||||| || ||| |||||||||| |||| ||| Sbjct 31950 GCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCG 31911 >seq2230 Length=20112346 Score = 147 bits (162), Expect = 1e-30 Identities = 385/579 (66%), Gaps = 14/579 (2%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| || || || | || ||||| | |||||| | || | ||||||||||| Sbjct 11223115 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 11223173 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | ||| || ||||||| |||||| ||| | || || || | || || || | || | Sbjct 11223174 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 11223233 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||||||| ||||| || |||||||||| ||| |||| || || | ||| ||| Sbjct 11223234 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 11223293 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | || ||||||||||| ||||| || || ||||| | || |||||| || || || Sbjct 11223294 -CTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCATGGTTCACCACGTAGAAGTGGCAA 11223351 Query 25627 ATGGTGTAGCACGGAGGAAG-------AGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGC 25679 | || | |||| | || || | ||| || | ||||| | ||||| || Sbjct 11223352 AGGGCATGGCACAGGGGCAGGGTGGCAGGGTATGAGAGGAAGATCTTT-TGATTCCAAGC 11223410 Query 25680 GCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAG 25739 || | ||||| | |||||||| |||||| |||| || |||||||| Sbjct 11223411 ACATAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCACCTTTTGCAG 11223470 Query 25740 CTGATCCACCCCCATCCCCGAGTA-GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAAT 25798 || || || || | || || | | || || |||| || || | ||| Sbjct 11223471 TTGGTCTACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAG 11223530 Query 25799 ACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAG-CCC 25857 ||||||||| || | || || || |||| || || ||||| ||| | | || || Sbjct 11223531 GCCTCCACTGAAAGCTATAAACTGGGCCTAAATCCCCTTCTTCTCTG-GTGGAGAGTACC 11223589 Query 25858 CTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 25917 | ||||| ||||||| ||| || | ||| |||||||| || || ||||| || Sbjct 11223590 AGGCTGTCCAAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGAC 11223649 Query 25918 AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 25956 ||||| || | |||||||| || ||| ||||||||| Sbjct 11223650 AGCTCCTTAGCATTTGTGGAGCCCTTGATCAACCACAGC 11223688 >seq6777 Length=13026147 Score = 102 bits (112), Expect = 6e-17 Identities = 114/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| ||||| || || | |||||| Sbjct 785376 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATG 785317 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || ||||||||| | ||||| || || ||||| ||| |||||| ||||| || Sbjct 785316 T-CTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 785258 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 | || || |||||| || || || || ||| Sbjct 785257 AAGGGCGTGGCACGGGGGTAGGGCCATGAGG 785227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340092928878648