Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq953 170 3e-37 seq9891 163 4e-35 seq2008 104 3e-17 >seq953 Length=6702869 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||||||||| || || || |||||||||||| || |||| || ||||| |||||| Sbjct 2030646 GTCTGAAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 2030705 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||||| ||||| || || ||||||||||| ||||||||||| || ||||| Sbjct 2030706 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACTAGACCAAAG 2030765 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || ||||| | |||| | ||| || || | || || |||||||| | Sbjct 2030766 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 2030825 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || |||| |||| Sbjct 2030826 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCGCCACCAATTATCT 2030874 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| | | |||| | ||||| || || |||||| ||| ||| | || Sbjct 2031684 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 2031743 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 2031744 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 2031803 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | ||||| |||||||||||| | | | ||| || || | Sbjct 2031804 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 2031863 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| | |||| || ||||| Sbjct 2031864 TTTCCTCCCTGAAAAATGAGAA 2031885 Score = 95.1 bits (104), Expect = 2e-14 Identities = 183/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | ||| || | |||||| | Sbjct 2030079 CTTACCCTGCCAGCAATTTGCCTAGTGAATGATTCAACAAACTGAGTGAGGCCGTGTTCC 2030138 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATG-TAGTCATACTTTGTTTTATCAATCTC 9440 | || | ||| ||||| || | || || || |||| || | | |||||||| Sbjct 2030139 AGTAGGAGGGAGTTGTTATAGATAAA-TTGCTGATAGTTGTAGTGTTGGCCATCAATCTG 2030197 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||| | || |||| || | ||||||||| || | |||||||||| | | ||||| Sbjct 2030198 AAAGGTGTCAGGCAGAAGGGCATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACG 2030257 Query 9501 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 |||||||||||||| | | ||| ||||| || || | |||| || | |||| Sbjct 2030258 GTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGT 2030316 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584 | ||||| || || ||||| ||||| Sbjct 2030317 GATAGCCACTCAGGTGCTGTACATA 2030341 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || || | ||| || ||||| |||| || | | Sbjct 2032291 TCACCTTTCACACCCATGGGCGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 2032350 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||| || || || || |||||||||||| || ||||| | | || || | Sbjct 2032351 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTT 2032410 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || ||||| ||||||| || ||||| ||||| Sbjct 2032411 GGCGGGCTCTCAATCAGATGTGATCTCGCTGAA 2032443 >seq9891 Length=223 Score = 163 bits (180), Expect = 4e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 9640 AACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTG 9699 ||||| || || || |||||||||||| || |||| || ||||| ||||||||||| Sbjct 223 AACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACTCTGTTA 164 Query 9700 TGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCT 9759 ||||||| ||||| || || ||||||||||| |||||||||||||| ||||| | || Sbjct 163 TGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAGACTTCC 104 Query 9760 TGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGG 9819 || || ||||| | |||| | ||| || || | || || |||||||| | ||||| Sbjct 103 TGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCGACCTGA 44 Query 9820 ACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||||||| | ||| |||||||| || || |||| |||| Sbjct 43 GTATCTTTGACTGTGGGAGGATACATCTCGCCACCAATTATCT 1 >seq2008 Length=20308448 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || ||||| || ||||| | |||||||| | || || ||||| ||| Sbjct 2729908 AAACCCATCTCACCGCCAAATGTGCTCGACTTCCAGTACTCTGGAGAACAGATAGGATTC 2729967 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| || |||||||| |||||||| | || | || ||||| || |||||| Sbjct 2729968 CCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATG 2730027 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| ||| || ||| || | | | || | ||| ||||||| || ||||||||| Sbjct 2730028 GAGTTTGGAGGGCACTTCTCAAGAAGCAGCCCTGGGTAGAACTCCAAGGCATCGATGTCT 2730087 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || || || | || || || || ||||| |||||| Sbjct 2730088 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 2730129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708429361709440