Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq7110 154 2e-32 seq1386 140 3e-28 seq9221 127 2e-24 seq1453 93.3 4e-14 >seq7110 Length=16720443 Score = 154 bits (170), Expect = 2e-32 Identities = 315/466 (68%), Gaps = 4/466 (1%) Strand=Plus/Minus Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229 ||||| | |||||| | ||||| || | ||||| || || | || || ||||| ||| Sbjct 13122559 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 13122500 Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289 |||| ||| ||| |||||||| |||||||||||||| | | || | || || || Sbjct 13122499 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 13122440 Query 21290 CCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA 21349 ||||| || | | ||| ||||| || ||||| || || || ||| || ||| Sbjct 13122439 CCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 13122380 Query 21350 TTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACG 21409 ||||| || || | || || | || || | || | || | |||||| || Sbjct 13122379 TTCATCCCAATGAGCTTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 13122320 Query 21410 GCTTCAACAATTATATTTATTATCCTAGATGTAC--TAGGGGGATACAATAATTGTTTAA 21467 || | || || |||||||| || || | ||| | | | ||||| | Sbjct 13122319 GCATTGACGAT--TATTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGA 13122262 Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 |||||| || ||||| ||||| || ||||| || || || || || | |||||| |||| Sbjct 13122261 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAA 13122202 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTG 21587 |||| | |||||||| | ||||| || || | ||| ||||| || ||||| | || | Sbjct 13122201 ATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAG 13122142 Query 21588 AAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACC 21633 ||||||| || || || || |||||||| || || || ||||| || Sbjct 13122141 AAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCC 13122096 >seq1386 Length=4420875 Score = 140 bits (154), Expect = 3e-28 Identities = 411/641 (64%), Gaps = 45/641 (7%) Strand=Plus/Plus Query 21461 TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCA 21520 ||||| ||||||| || ||||| ||||| || ||||| || || || || || | |||| Sbjct 837496 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCA 837555 Query 21521 TTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAAT 21580 || |||||||| | |||||||| | |||| ||||| | ||| ||||| || ||||| Sbjct 837556 TTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAA 837615 Query 21581 GCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTA---- 21636 | || |||||||| || || || || |||||||| || || || ||||| || | Sbjct 837616 GAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGT 837675 Query 21637 ---------------------TGTAGAT--------------TCTTTATCCAATATCCAT 21661 || ||| ||||| ||| ||||| Sbjct 837676 TGGAGAACAATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAG 837735 Query 21662 TTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720 ||||| | |||||| ||||||| |||| ||||| |||||||| || || || Sbjct 837736 CACAAGGCCCAATCTGCCTTCTTCTTTAC-ACAAGGCATTGTCTCAATAGCGTTGAAGAG 837794 Query 21721 ATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGA 21780 | | |||| | ||| | ||| ||||||||||||||| Sbjct 837795 AAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGA 837854 Query 21781 ATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAAC 21840 ||| || ||||| || || || | || || || ||||| | || || | | ||||| Sbjct 837855 ATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACAGGCTTCCGTAATCTGAAC 837914 Query 21841 CTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAA 21899 || | |||| | | | | ||||||||||||||||||| |||||||| || ||||| | Sbjct 837915 TTCTTGGCTAAACT-GCTAAACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGA 837973 Query 21900 ATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT-CTAAT 21958 | |||| | || || ||||||| || | | | | || ||| | || | Sbjct 837974 AAGCCAGAACATGCAAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA- 838032 Query 21959 AAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATAC 22018 | || || || | || || ||||||| |||||||||| ||| ||| || |||||| Sbjct 838033 ATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATAC 838092 Query 22019 ATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 || ||| ||||||| ||| || ||||| || ||||| Sbjct 838093 ATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 838133 >seq9221 Length=8796100 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || ||||| || ||||| | | | ||||| ||| | ||||||||||| ||||| ||| Sbjct 5129380 AGCTCTTCCTCAGTTTCGAACTGAGCAAGAACAGCTTCTAATGAAGTACAGAATGTCTTG 5129439 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||| |||||||||||| ||||| || ||| ||||||||||||| Sbjct 5129440 CTGAATGTCCAATTCCTTGCATCTTCAGAAAAATAAAAACACTTACTTCCAAATCCAATC 5129499 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||| | |||||||| || ||||| Sbjct 5129500 CATTCTTTTGGGCAGGTGACATA 5129522 >seq1453 Length=4135625 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| |||||||| | ||| ||||||||| ||| | ||||| | | | Sbjct 1844863 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 1844804 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 1844803 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 1844744 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 1844743 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 1844713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531829152962240