Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1386 316 3e-81 seq7110 302 6e-77 seq8888 141 1e-28 seq1508 140 4e-28 seq1453 107 2e-18 seq5999 87.8 2e-12 >seq1386 Length=4420875 Score = 316 bits (350), Expect = 3e-81 Identities = 544/792 (69%), Gaps = 42/792 (5%) Strand=Plus/Plus Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 ||| || || |||||||| || || ||||||| |||||||| || || || || Sbjct 837342 TCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 837401 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254 ||||| || ||| | || || || || ||||| || || |||| || || | Sbjct 837402 CACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACGATTATTTA 837461 Query 33255 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 33314 | | || | | || ||| || | | ||||| ||||||| || || || || Sbjct 837462 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTC 837521 Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374 ||||| | |||||||||||| ||||| ||||| |||||||| ||||| |||||||| || Sbjct 837522 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAG 837581 Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434 || || ||||| ||||| ||||| || || || || |||||||||||||||||||| || Sbjct 837582 ACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 837641 Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCGC----TGTCAT---GT----- 33480 |||||||||||| | | | ||||||| || || | || ||| || Sbjct 837642 TGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTTGGAG 837701 Query 33481 -----------AT-CCACTTTT-----GA-----------GCCCAATCGGCCTTCTTTTT 33512 || || |||| || |||||||| |||||||| || Sbjct 837702 AACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTT 837761 Query 33513 TACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 33572 |||||||||||| || || || || || |||||| | | |||| || |||||||| Sbjct 837762 TACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAAT 837821 Query 33573 ATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 33632 ||||| || || | |||||||||||||| ||||| |||||||| ||||| || | || Sbjct 837822 GTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAA 837881 Query 33633 TCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATT 33692 || |||||||| | || || |||||||| |||||| | ||| | | |||| || Sbjct 837882 GCCATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTAAACCAAGTT 837941 Query 33693 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 33752 |||||| ||||| || ||||| |||||||| || |||| ||||| || |||||| | Sbjct 837942 TTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGCAAAATGAAATATCT 838001 Query 33753 TTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCAC 33812 || || || | || | ||| | | || || || || | || || ||||| | Sbjct 838002 CTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGC 838061 Query 33813 TGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGG 33872 ||||||||| || ||||| || || |||||||| | ||| || |||| |||| ||| || Sbjct 838062 TGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGG 838121 Query 33873 GAAAATAACAAA 33884 || || ||||| Sbjct 838122 AAAGATGACAAA 838133 >seq7110 Length=16720443 Score = 302 bits (334), Expect = 6e-77 Identities = 648/970 (67%), Gaps = 45/970 (5%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 33014 ||| |||||| |||| || | ||| ||| ||| || ||||| |||||||| | Sbjct 13122602 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACATCACTCCCATCCT 13122543 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || || || || || | || || | || ||||| || ||||||| ||| ||||| || Sbjct 13122542 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 13122483 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 ||| || ||||| ||||| || | ||| || |||| |||| || || | Sbjct 13122482 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCCGCATAAG 13122423 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 ||| || || |||||||| || || ||||||| |||||||| || || || || Sbjct 13122422 TCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 13122363 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254 |||| || ||| | || || || || ||||| || || |||| || || | Sbjct 13122362 CACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTA 13122303 Query 33255 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 33314 | | || | | || ||| || | | ||||| ||||||| || || || || Sbjct 13122302 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTC 13122243 Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374 ||||| | |||||||||||| ||||| ||||| |||||||| ||||| |||||||| || Sbjct 13122242 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAG 13122183 Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434 || || || || ||||| ||||| || || || || |||||||||||||||||||| || Sbjct 13122182 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 13122123 Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCGC----TGTCAT---GT----- 33480 |||||||||||| | | | ||||||| || || | || ||| || Sbjct 13122122 TGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTTGGAG 13122063 Query 33481 -----------AT-CCACTTTT-----GA-----------GCCCAATCGGCCTTCTTTTT 33512 || || |||| || |||||||| |||||||| || Sbjct 13122062 AACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTT 13122003 Query 33513 TACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 33572 |||||||||||| || || ||||| || |||||| | | |||| || ||||| || Sbjct 13122002 TACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTGAAT 13121943 Query 33573 ATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 33632 ||||| || || | |||||||||||||||||||| |||||||| ||||| || || || Sbjct 13121942 GTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTTTCCATGGCAATTTGGAA 13121883 Query 33633 TCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATT 33692 || |||||| | || || |||||||| |||||| | || | ||| ||| || Sbjct 13121882 GCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCACTCCACCAGGTT 13121823 Query 33693 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 33752 |||||| |||| |||||||| |||||| | || | || ||||| | |||||| | Sbjct 13121822 TTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAGGACATGCGAAGTGAAATATCT 13121763 Query 33753 TTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCAC 33812 | || || | || | | | | || || || || | || || || || | Sbjct 13121762 CTACTCAGGCTTCAGGGCTTCCTGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGC 13121703 Query 33813 TGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGG 33872 ||||| || || ||||| || || ||| |||| | ||| || ||| |||| ||| || Sbjct 13121702 CGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCAAATATCACGGTATTCGATAGG 13121643 Query 33873 GAAAATAACA 33882 || || ||| Sbjct 13121642 AAAGATGACA 13121633 >seq8888 Length=9016713 Score = 141 bits (156), Expect = 1e-28 Identities = 104/121 (86%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| ||||| |||||||| ||||| |||||||| || || || |||| Sbjct 1702276 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 1702335 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||| ||||||||||||| Sbjct 1702336 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 1702395 Query 33446 C 33446 | Sbjct 1702396 C 1702396 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 1704272 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 1704331 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | || || |||||||| |||||| | ||| || || Sbjct 1704332 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTGGCTAAACCGCTC 1704391 Query 33684 CGCC 33687 | || Sbjct 1704392 CACC 1704395 >seq1508 Length=3848527 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 149381 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 149440 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 149441 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 149500 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 149501 CTGTTTCTTATACCATA 149517 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || |||||||| || || || || || || | Sbjct 153724 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 153783 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||||| |||||| | || || ||| | || ||||| || | Sbjct 153784 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 153843 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62752 | | | |||||||| || || || | ||||| || ||||| || || || | ||| Sbjct 153844 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 153901 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 158207 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 158266 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 158267 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 158326 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 158327 AGGCTCCAGGTAAATAGC 158344 >seq1453 Length=4135625 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| || ||||| ||||| || || | || || Sbjct 1830590 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 1830531 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 1830530 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1830472 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| ||||||||||||||||||||||| || || | || |||| Sbjct 1826287 CCAAATTTTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAA 1826228 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 33803 |||| || || |||| | | || || ||||| | | || ||| || |||| ||| || Sbjct 1826227 AATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 1826170 >seq5999 Length=11637418 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/257 (68%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 8324997 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 8324940 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | |||||| | | |||| |||| | | || ||||| || |||| ||| || | || Sbjct 8324939 TCTATTTCTGGGTGAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 8324880 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | |||| | ||| ||| ||||| || | || | ||||| ||||||||| Sbjct 8324879 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACAACCATTTCCTCTATAATCT 8324820 Query 31225 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31281 || ||| | ||||| |||||| ||| || | |||| | || ||||| | ||| Sbjct 8324819 TCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 8324760 Query 31282 GCTATTCTACCATAGCA 31298 |||| ||| |||||||| Sbjct 8324759 GCTACTCTCCCATAGCA 8324743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622863289012160