Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8555 120 2e-22 seq920 114 9e-21 seq3672 111 1e-19 seq4777 105 4e-18 seq2896 104 2e-17 seq6888 100 2e-16 seq1564 95.1 8e-15 seq2941 93.3 3e-14 seq5666 84.2 1e-11 seq9777 82.4 5e-11 seq7443 82.4 5e-11 >seq8555 Length=10321147 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | || Sbjct 2780820 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 2780879 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 |||| ||| ||||||||||| || || | ||| || || | || | ||||| ||||| Sbjct 2780880 TTCTAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 2780939 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| ||| || || | || || || Sbjct 2780940 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 2780999 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCT 38313 || ||||||| ||| |||||||| |||| Sbjct 2781000 CTTCCCCGTCACGGTCTTCACGAAAATCT 2781028 >seq920 Length=9572204 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | || Sbjct 2426411 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 2426470 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || || | || | ||||| ||||| Sbjct 2426471 TTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 2426530 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | | |||| ||| || || | || || || Sbjct 2426531 CTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTCGACCTCAAGAGTGATGGT 2426590 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| |||||||| |||||||| || Sbjct 2426591 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 2426626 Score = 111 bits (122), Expect = 1e-19 Identities = 82/96 (85%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||| ||| |||||||||| || |||||||| ||||| || |||||||| Sbjct 9557463 AAGCCCATTCCTTTGACTGTGGTTTCACTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 9557404 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGAT 25992 | |||| ||||||||||||||||||||||||||||| Sbjct 9557403 TCATCCATTCATGCGCGTCACTAATTAGATGACGAT 9557368 >seq3672 Length=15443579 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | || Sbjct 13644553 CAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 13644494 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| ||||| ||||| || || | ||| || || | || | ||||| ||||| Sbjct 13644493 TTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 13644434 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| || || | | ||||| ||| || || | || || || Sbjct 13644433 CTGGATCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 13644374 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || |||| ||| |||||||| |||||||| || Sbjct 13644373 CTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 13644338 >seq4777 Length=16179633 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||| | ||||||||||| ||||| |||||||||| |||| | || Sbjct 14702119 CAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGTCCATC 14702060 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || || | || | ||||| ||||| Sbjct 14702059 TTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 14702000 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | | ||| ||| || || | || || || Sbjct 14701999 CTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAGTGATGGT 14701940 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| |||||||| |||||||| || Sbjct 14701939 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 14701904 >seq2896 Length=17782117 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 9683911 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 9683970 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 9683971 GCCGGTATTTAGCCTTA 9683987 >seq6888 Length=10648577 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||| ||||||| |||||||| ||||| || |||||| | Sbjct 9659673 AAGCCTGTTCCCTTGGCTGTGTTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 9659614 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || ||||||||||||||||| Sbjct 9659613 TCATCCATTCATGTGCACCACTAATTAGATGACGA 9659579 >seq1564 Length=3672159 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||| ||| | |||| || || || |||||| || || |||||||||| Sbjct 1054644 TACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAG 1054703 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | ||||| || ||||| || || | || || || | || Sbjct 1054704 AAAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGG 1054763 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| || ||| || || |||||| |||| || || || | || | Sbjct 1054764 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 1054823 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || || || || || |||||||| |||||||| |||||||| || Sbjct 1054824 CCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATCTT 1054875 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||| ||| | |||| || || || |||||| || || |||||||||| Sbjct 1054416 TACCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAG 1054475 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | ||||| || ||||| || || | || || || | || Sbjct 1054476 AAAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGG 1054535 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| || ||| || || |||||| |||| || || || | || | Sbjct 1054536 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 1054595 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||| |||||||| |||||||| Sbjct 1054596 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1054644 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||| ||| | |||| || || || ||| || || || |||||||||| Sbjct 1054188 TACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 1054247 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | ||||| || ||||| || || | || || || | || Sbjct 1054248 AAAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGG 1054307 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| || ||| || || |||||| |||| || || || | || | Sbjct 1054308 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 1054367 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||| |||||||| |||||||| Sbjct 1054368 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1054416 >seq2941 Length=1025224 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||||||| |||||||||||| ||||| ||||||||| |||| | || || | ||| Sbjct 785923 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTG 785864 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 || || ||||| || || | ||| || || | || | ||||| |||||| || || Sbjct 785863 CTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCCTTGTCCTGGATCTT 785804 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| ||||| | | ||||| |||||| | | || || || || || || Sbjct 785803 GGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAGTGATGGTCTT-CCTGT 785745 Query 38294 CAAGGTTTTCACGAATATCTGCA 38316 || ||| |||| ||| ||||||| Sbjct 785744 CAGGGTCTTCATGAAAATCTGCA 785722 >seq5666 Length=11816653 Score = 84.2 bits (92), Expect = 1e-11 Identities = 70/86 (81%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 || ||||||||||||||| ||| |||||||| ||||| || |||||| || |||| Sbjct 4774300 TTTCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCA 4774359 Query 25964 TTCATGCGCGTCACTAATTAGATGAC 25989 ||||||| ||| ||||||||||||| Sbjct 4774360 TTCATGCATGTCCCTAATTAGATGAC 4774385 >seq9777 Length=8339292 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || || || ||| || || || ||||||||||| Sbjct 5690785 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 5690844 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | ||||| || ||||| || || | || || || | |||| Sbjct 5690845 GGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 5690904 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| || || |||||| |||| || || || | || || Sbjct 5690905 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 5690964 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||||||| |||||||| |||||||| || Sbjct 5690965 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 5691014 >seq7443 Length=30544692 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/229 (68%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | ||| | |||| || || || ||| || || || ||||||||||| Sbjct 5029166 CCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 5029107 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || | ||||| || ||||| || || | || || |||| |||| Sbjct 5029106 ATAGTGCGGCCGTCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 5029047 Query 38211 --ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | |||||| || ||| || || ||||||||||| || || || | || | Sbjct 5029046 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCA 5028987 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || ||||||| ||| ||| |||| |||||||| Sbjct 5028986 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 5028938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334903210546856